Cluster: CGMR076943_CGC11
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate: galactan
- Genome ID: CGMR076943
- CGC Family ID: CGCFAM_00819
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | k141_154308 | k141_154308_12 | 11922 | 13943 | - | GH42 |
| STP | k141_154308 | k141_154308_13 | 14144 | 14902 | + | SBP_bac_1 |
| pfam | k141_154308 | k141_154308_14 | 14872 | 15438 | + | SBP_bac_1 |
| TC | k141_154308 | k141_154308_15 | 15543 | 16535 | + | 3.A.1.1.48 |
| TC | k141_154308 | k141_154308_16 | 16539 | 17441 | + | 3.A.1.1.48 |
Gene ID: k141_154308_12
Type: CAZyme
Location: 11922 - 13943 (-)
Type: CAZyme
Location: 11922 - 13943 (-)
Gene ID: k141_154308_13
Type: STP
Location: 14144 - 14902 (+)
Type: STP
Location: 14144 - 14902 (+)
Gene ID: k141_154308_14
Type: pfam
Location: 14872 - 15438 (+)
Type: pfam
Location: 14872 - 15438 (+)
Gene ID: k141_154308_15
Type: TC
Location: 15543 - 16535 (+)
Type: TC
Location: 15543 - 16535 (+)
Gene ID: k141_154308_16
Type: TC
Location: 16539 - 17441 (+)
Type: TC
Location: 16539 - 17441 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Microbacteriaceae
Genus
Clavibacter
Species
Clavibacter sepedonicus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.