Cluster: CGMR076789_CGC28
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: CGMR076789
- CGC Family ID: CGCFAM_00836
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | k141_6889 | k141_6889_2 | 2262 | 3377 | + | 8.A.4.1.1 |
| TC | k141_6889 | k141_6889_3 | 3401 | 5077 | + | 1.B.18.1.2 |
| pfam | k141_6889 | k141_6889_4 | 5087 | 5827 | + | CTP_transf_3 | NTP_transf_3 |
| CAZyme | k141_6889 | k141_6889_5 | 5824 | 7851 | + | GT107 | GT107 |
| TC | k141_6889 | k141_6889_6 | 7886 | 9118 | + | 9.A.41.1.3 |
Gene ID: k141_6889_2
Type: TC
Location: 2262 - 3377 (+)
Type: TC
Location: 2262 - 3377 (+)
Gene ID: k141_6889_3
Type: TC
Location: 3401 - 5077 (+)
Type: TC
Location: 3401 - 5077 (+)
Gene ID: k141_6889_4
Type: pfam
Location: 5087 - 5827 (+)
Type: pfam
Location: 5087 - 5827 (+)
Gene ID: k141_6889_5
Type: CAZyme
Location: 5824 - 7851 (+)
Type: CAZyme
Location: 5824 - 7851 (+)
Gene ID: k141_6889_6
Type: TC
Location: 7886 - 9118 (+)
Type: TC
Location: 7886 - 9118 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Proteus
Species
Proteus sp023454395
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| k141_6889_2 | omnivore > vegetarian | 1.52954 | 0.04724 |
| k141_6889_3 | omnivore > vegan | 1.68368 | 0.04124 |
| k141_6889_3 | omnivore > vegetarian | 2.10829 | 0.01556 |
| k141_6889_4 | omnivore > vegan | 1.37846 | 0.04124 |
| k141_6889_5 | omnivore > vegan | 1.13473 | 0.04124 |
| k141_6889_5 | omnivore > vegetarian | 1.88517 | 0.01892 |
| k141_6889_6 | omnivore > vegan | 1.78093 | 0.04124 |
| k141_6889_6 | omnivore > vegetarian | 3.00209 | 0.01556 |