Cluster: CGMR076003_CGC9
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: CGMR076003
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | k141_86936 | k141_86936_30 | 27530 | 29374 | - | 3.A.1.106.2 |
| TF | k141_86936 | k141_86936_31 | 29452 | 30342 | - | HTH_AraC | HTH_AraC |
| pfam | k141_86936 | k141_86936_32 | 30446 | 30790 | + | CMD |
| CAZyme | k141_86936 | k141_86936_33 | 30863 | 31918 | - | GT9 |
Gene ID: k141_86936_30
Type: TC
Location: 27530 - 29374 (-)
Type: TC
Location: 27530 - 29374 (-)
Gene ID: k141_86936_31
Type: TF
Location: 29452 - 30342 (-)
Type: TF
Location: 29452 - 30342 (-)
Gene ID: k141_86936_32
Type: pfam
Location: 30446 - 30790 (+)
Type: pfam
Location: 30446 - 30790 (+)
Gene ID: k141_86936_33
Type: CAZyme
Location: 30863 - 31918 (-)
Type: CAZyme
Location: 30863 - 31918 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pasteurellaceae
Genus
Haemophilus_D
Species
Haemophilus_D parainfluenzae_S
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| k141_86936_31 | vegetarian > vegan | 1.19302 | 0.02998 |
| k141_86936_32 | vegan > omnivore | 1.24910 | 0.02034 |
| k141_86936_32 | vegetarian > omnivore | 1.52947 | 0.01077 |
| k141_86936_33 | vegetarian > omnivore | 1.01337 | 0.01077 |
| k141_86936_33 | vegetarian > vegan | 1.20704 | 0.02998 |