Cluster: CGMR076003_CGC6
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 2
- Substrate:
- Genome ID: CGMR076003
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | k141_105057 | k141_105057_17 | 18900 | 19790 | + | 3.A.1.14.1 |
| TC | k141_105057 | k141_105057_18 | 19790 | 20779 | + | 3.A.1.14.1 |
| TC | k141_105057 | k141_105057_19 | 20779 | 21762 | + | 3.A.1.14.1 |
| TC | k141_105057 | k141_105057_20 | 21762 | 22529 | + | 3.A.1.14.8 |
| TC | k141_105057 | k141_105057_21 | 22733 | 25150 | + | 1.B.55.1.3 |
| CAZyme | k141_105057 | k141_105057_22 | 25172 | 27088 | + | CE4 | GH153 |
| CAZyme | k141_105057 | k141_105057_23 | 27098 | 28339 | + | GT2 |
Gene ID: k141_105057_17
Type: TC
Location: 18900 - 19790 (+)
Type: TC
Location: 18900 - 19790 (+)
Gene ID: k141_105057_18
Type: TC
Location: 19790 - 20779 (+)
Type: TC
Location: 19790 - 20779 (+)
Gene ID: k141_105057_19
Type: TC
Location: 20779 - 21762 (+)
Type: TC
Location: 20779 - 21762 (+)
Gene ID: k141_105057_20
Type: TC
Location: 21762 - 22529 (+)
Type: TC
Location: 21762 - 22529 (+)
Gene ID: k141_105057_21
Type: TC
Location: 22733 - 25150 (+)
Type: TC
Location: 22733 - 25150 (+)
Gene ID: k141_105057_22
Type: CAZyme
Location: 25172 - 27088 (+)
Type: CAZyme
Location: 25172 - 27088 (+)
Gene ID: k141_105057_23
Type: CAZyme
Location: 27098 - 28339 (+)
Type: CAZyme
Location: 27098 - 28339 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pasteurellaceae
Genus
Haemophilus_D
Species
Haemophilus_D parainfluenzae_S
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| k141_105057_17 | vegetarian > omnivore | 1.40663 | 0.01077 |
| k141_105057_18 | vegetarian > omnivore | 1.38377 | 0.01077 |