Cluster: CGMR076003_CGC5
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: CGMR076003
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | k141_1208 | k141_1208_8 | 10331 | 10588 | + | 8.A.8.1.1 |
| TC | k141_1208 | k141_1208_9 | 10668 | 12395 | + | 8.A.7.1.1 |
| TC | k141_1208 | k141_1208_10 | 12455 | 12955 | + | 4.A.1.1.1 |
| pfam | k141_1208 | k141_1208_11 | 13029 | 14228 | + | PMI_typeI_cat | MPI_cupin_dom |
| CAZyme | k141_1208 | k141_1208_12 | 14350 | 17376 | + | GH2 |
Gene ID: k141_1208_8
Type: TC
Location: 10331 - 10588 (+)
Type: TC
Location: 10331 - 10588 (+)
Gene ID: k141_1208_9
Type: TC
Location: 10668 - 12395 (+)
Type: TC
Location: 10668 - 12395 (+)
Gene ID: k141_1208_10
Type: TC
Location: 12455 - 12955 (+)
Type: TC
Location: 12455 - 12955 (+)
Gene ID: k141_1208_11
Type: pfam
Location: 13029 - 14228 (+)
Type: pfam
Location: 13029 - 14228 (+)
Gene ID: k141_1208_12
Type: CAZyme
Location: 14350 - 17376 (+)
Type: CAZyme
Location: 14350 - 17376 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pasteurellaceae
Genus
Haemophilus_D
Species
Haemophilus_D parainfluenzae_S
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| k141_1208_8 | vegetarian > omnivore | 1.10456 | 0.01077 |
| k141_1208_9 | vegan > omnivore | 1.37905 | 0.02034 |
| k141_1208_10 | vegan > omnivore | 2.56120 | 0.02034 |
| k141_1208_10 | vegetarian > omnivore | 1.56281 | 0.01077 |