Cluster: CGMR076003_CGC4
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: CGMR076003
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | k141_73405 | k141_73405_62 | 67777 | 69681 | + | 2.A.37.1.2 |
| pfam | k141_73405 | k141_73405_63 | 69717 | 71852 | - | UPF0020 | THUMP | Cons_hypoth95 | Methyltrans_SAM | RlmL_1st |
| TC | k141_73405 | k141_73405_64 | 71972 | 72952 | - | 3.A.1.15.5 |
| TC | k141_73405 | k141_73405_65 | 73120 | 73881 | - | 3.A.16.1.3 |
| CAZyme | k141_73405 | k141_73405_66 | 73881 | 75008 | - | GH102 |
Gene ID: k141_73405_62
Type: TC
Location: 67777 - 69681 (+)
Type: TC
Location: 67777 - 69681 (+)
Gene ID: k141_73405_63
Type: pfam
Location: 69717 - 71852 (-)
Type: pfam
Location: 69717 - 71852 (-)
Gene ID: k141_73405_64
Type: TC
Location: 71972 - 72952 (-)
Type: TC
Location: 71972 - 72952 (-)
Gene ID: k141_73405_65
Type: TC
Location: 73120 - 73881 (-)
Type: TC
Location: 73120 - 73881 (-)
Gene ID: k141_73405_66
Type: CAZyme
Location: 73881 - 75008 (-)
Type: CAZyme
Location: 73881 - 75008 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pasteurellaceae
Genus
Haemophilus_D
Species
Haemophilus_D parainfluenzae_S
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| k141_73405_62 | vegetarian > omnivore | 1.00963 | 0.01077 |
| k141_73405_63 | vegan > omnivore | 1.39047 | 0.02034 |
| k141_73405_63 | vegetarian > omnivore | 1.37653 | 0.01077 |
| k141_73405_64 | vegan > omnivore | 1.26238 | 0.02034 |
| k141_73405_65 | vegan > omnivore | 1.41993 | 0.02034 |
| k141_73405_65 | vegetarian > omnivore | 1.54517 | 0.01077 |
| k141_73405_66 | vegetarian > omnivore | 1.19867 | 0.01077 |