Cluster: CGMR076003_CGC13
🧬 Cluster Details
- Gene Count: 10
- CAZyme Count: 4
- Substrate:
- Genome ID: CGMR076003
- CGC Family ID: CGCFAM_01708
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | k141_1460 | k141_1460_19 | 20175 | 20948 | - | 3.A.1.14.19 |
| TC | k141_1460 | k141_1460_20 | 20948 | 21997 | - | 3.A.1.14.5 |
| STP | k141_1460 | k141_1460_21 | 22013 | 23128 | - | Peripla_BP_2 |
| pfam | k141_1460 | k141_1460_22 | 23228 | 24367 | - | Cytochrom_C | CCP_MauG |
| CAZyme | k141_1460 | k141_1460_23 | 24447 | 25565 | - | GH103 |
| CAZyme | k141_1460 | k141_1460_24 | 25599 | 26402 | - | GT2 |
| NULL(UNKNOWN) | k141_1460 | k141_1460_25 | 26443 | 26781 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | k141_1460 | k141_1460_26 | 26820 | 27701 | - | GT2 |
| NULL(UNKNOWN) | k141_1460 | k141_1460_27 | 27694 | 28893 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | k141_1460 | k141_1460_28 | 28901 | 29671 | - | GT25 |
Gene ID: k141_1460_19
Type: TC
Location: 20175 - 20948 (-)
Type: TC
Location: 20175 - 20948 (-)
Gene ID: k141_1460_20
Type: TC
Location: 20948 - 21997 (-)
Type: TC
Location: 20948 - 21997 (-)
Gene ID: k141_1460_21
Type: STP
Location: 22013 - 23128 (-)
Type: STP
Location: 22013 - 23128 (-)
Gene ID: k141_1460_22
Type: pfam
Location: 23228 - 24367 (-)
Type: pfam
Location: 23228 - 24367 (-)
Gene ID: k141_1460_23
Type: CAZyme
Location: 24447 - 25565 (-)
Type: CAZyme
Location: 24447 - 25565 (-)
Gene ID: k141_1460_24
Type: CAZyme
Location: 25599 - 26402 (-)
Type: CAZyme
Location: 25599 - 26402 (-)
Gene ID: k141_1460_25
Type:
Location: 26443 - 26781 (-)
Type:
Location: 26443 - 26781 (-)
Gene ID: k141_1460_26
Type: CAZyme
Location: 26820 - 27701 (-)
Type: CAZyme
Location: 26820 - 27701 (-)
Gene ID: k141_1460_27
Type:
Location: 27694 - 28893 (-)
Type:
Location: 27694 - 28893 (-)
Gene ID: k141_1460_28
Type: CAZyme
Location: 28901 - 29671 (-)
Type: CAZyme
Location: 28901 - 29671 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pasteurellaceae
Genus
Haemophilus_D
Species
Haemophilus_D parainfluenzae_S
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| k141_1460_21 | vegan > omnivore | 1.50444 | 0.02034 |
| k141_1460_21 | vegetarian > omnivore | 1.04911 | 0.01077 |
| k141_1460_26 | vegetarian > omnivore | 2.11246 | 0.01077 |
| k141_1460_26 | vegetarian > vegan | 1.47945 | 0.03228 |