Cluster: CGMR076003_CGC12
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: CGMR076003
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | k141_1460 | k141_1460_7 | 7552 | 9951 | + | GT51 |
| TC | k141_1460 | k141_1460_8 | 10169 | 12073 | + | 2.A.108.2.10 |
| TC | k141_1460 | k141_1460_9 | 12102 | 12623 | + | 2.A.108.2.10 |
| pfam | k141_1460 | k141_1460_10 | 12739 | 14133 | + | YHS | FtrD-like |
| TC | k141_1460 | k141_1460_11 | 14133 | 15473 | + | 3.A.1.122.8 |
| pfam | k141_1460 | k141_1460_12 | 15460 | 16593 | + | FtsX | MacB_PCD |
| TC | k141_1460 | k141_1460_13 | 16595 | 17266 | + | 3.A.1.122.8 |
Gene ID: k141_1460_7
Type: CAZyme
Location: 7552 - 9951 (+)
Type: CAZyme
Location: 7552 - 9951 (+)
Gene ID: k141_1460_8
Type: TC
Location: 10169 - 12073 (+)
Type: TC
Location: 10169 - 12073 (+)
Gene ID: k141_1460_9
Type: TC
Location: 12102 - 12623 (+)
Type: TC
Location: 12102 - 12623 (+)
Gene ID: k141_1460_10
Type: pfam
Location: 12739 - 14133 (+)
Type: pfam
Location: 12739 - 14133 (+)
Gene ID: k141_1460_11
Type: TC
Location: 14133 - 15473 (+)
Type: TC
Location: 14133 - 15473 (+)
Gene ID: k141_1460_12
Type: pfam
Location: 15460 - 16593 (+)
Type: pfam
Location: 15460 - 16593 (+)
Gene ID: k141_1460_13
Type: TC
Location: 16595 - 17266 (+)
Type: TC
Location: 16595 - 17266 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pasteurellaceae
Genus
Haemophilus_D
Species
Haemophilus_D parainfluenzae_S
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| k141_1460_8 | vegetarian > vegan | 1.16586 | 0.02998 |
| k141_1460_10 | vegetarian > vegan | 1.78798 | 0.02445 |