Cluster: CGMR075230_CGC16
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: CGMR075230
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | k141_92911 | k141_92911_17 | 20708 | 22186 | + | GH1 |
| TC | k141_92911 | k141_92911_18 | 22198 | 23568 | + | 4.A.1.2.11 |
| pfam | k141_92911 | k141_92911_19 | 23695 | 25830 | - | Radical_SAM_N | DUF3362 |
| TC | k141_92911 | k141_92911_20 | 26084 | 26800 | + | 9.B.143.2.3 |
Gene ID: k141_92911_17
Type: CAZyme
Location: 20708 - 22186 (+)
Type: CAZyme
Location: 20708 - 22186 (+)
Gene ID: k141_92911_18
Type: TC
Location: 22198 - 23568 (+)
Type: TC
Location: 22198 - 23568 (+)
Gene ID: k141_92911_19
Type: pfam
Location: 23695 - 25830 (-)
Type: pfam
Location: 23695 - 25830 (-)
Gene ID: k141_92911_20
Type: TC
Location: 26084 - 26800 (+)
Type: TC
Location: 26084 - 26800 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| k141_92911_17 | vegan > omnivore | 1.31616 | 0.00701 |
| k141_92911_18 | vegan > omnivore | 1.24460 | 0.00701 |