Cluster: CGMR072869_CGC21
🧬 Cluster Details
- Gene Count: 16
- CAZyme Count: 1
- Substrate:
- Genome ID: CGMR072869
- CGC Family ID: CGCFAM_03367
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | k141_178168 | k141_178168_3 | 729 | 2198 | - | 9.B.42.1.3 |
| pfam | k141_178168 | k141_178168_4 | 2378 | 3193 | + | T2SSC |
| TC | k141_178168 | k141_178168_5 | 3177 | 5129 | + | 1.B.22.1.1 |
| TC | k141_178168 | k141_178168_6 | 5139 | 6620 | + | 3.A.15.1.1 |
| TC | k141_178168 | k141_178168_7 | 6617 | 7813 | + | 3.A.15.1.1 |
| TC | k141_178168 | k141_178168_8 | 7823 | 8260 | + | 3.A.15.1.1 |
| TC | k141_178168 | k141_178168_9 | 8268 | 8777 | + | 3.A.15.1.1 |
| pfam | k141_178168 | k141_178168_10 | 8774 | 9151 | + | T2SSI | N_methyl |
| pfam | k141_178168 | k141_178168_11 | 9144 | 9731 | + | N_methyl | T2SSJ |
| TC | k141_178168 | k141_178168_12 | 9724 | 10707 | + | 3.A.15.1.1 |
| pfam | k141_178168 | k141_178168_13 | 10722 | 11885 | + | T2SSL | GspL_C |
| pfam | k141_178168 | k141_178168_14 | 11882 | 12343 | + | T2SSM |
| TC | k141_178168 | k141_178168_15 | 12343 | 13020 | + | 3.A.15.1.1 |
| pfam | k141_178168 | k141_178168_16 | 13049 | 13525 | - | Ferritin |
| pfam | k141_178168 | k141_178168_17 | 13597 | 13791 | - | Fer2_BFD |
| CAZyme | k141_178168 | k141_178168_18 | 13960 | 16653 | - | GH18 |
Gene ID: k141_178168_3
Type: TC
Location: 729 - 2198 (-)
Type: TC
Location: 729 - 2198 (-)
Gene ID: k141_178168_4
Type: pfam
Location: 2378 - 3193 (+)
Type: pfam
Location: 2378 - 3193 (+)
Gene ID: k141_178168_5
Type: TC
Location: 3177 - 5129 (+)
Type: TC
Location: 3177 - 5129 (+)
Gene ID: k141_178168_6
Type: TC
Location: 5139 - 6620 (+)
Type: TC
Location: 5139 - 6620 (+)
Gene ID: k141_178168_7
Type: TC
Location: 6617 - 7813 (+)
Type: TC
Location: 6617 - 7813 (+)
Gene ID: k141_178168_8
Type: TC
Location: 7823 - 8260 (+)
Type: TC
Location: 7823 - 8260 (+)
Gene ID: k141_178168_9
Type: TC
Location: 8268 - 8777 (+)
Type: TC
Location: 8268 - 8777 (+)
Gene ID: k141_178168_10
Type: pfam
Location: 8774 - 9151 (+)
Type: pfam
Location: 8774 - 9151 (+)
Gene ID: k141_178168_11
Type: pfam
Location: 9144 - 9731 (+)
Type: pfam
Location: 9144 - 9731 (+)
Gene ID: k141_178168_12
Type: TC
Location: 9724 - 10707 (+)
Type: TC
Location: 9724 - 10707 (+)
Gene ID: k141_178168_13
Type: pfam
Location: 10722 - 11885 (+)
Type: pfam
Location: 10722 - 11885 (+)
Gene ID: k141_178168_14
Type: pfam
Location: 11882 - 12343 (+)
Type: pfam
Location: 11882 - 12343 (+)
Gene ID: k141_178168_15
Type: TC
Location: 12343 - 13020 (+)
Type: TC
Location: 12343 - 13020 (+)
Gene ID: k141_178168_16
Type: pfam
Location: 13049 - 13525 (-)
Type: pfam
Location: 13049 - 13525 (-)
Gene ID: k141_178168_17
Type: pfam
Location: 13597 - 13791 (-)
Type: pfam
Location: 13597 - 13791 (-)
Gene ID: k141_178168_18
Type: CAZyme
Location: 13960 - 16653 (-)
Type: CAZyme
Location: 13960 - 16653 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Species
Citrobacter sp001037495
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.