Cluster: CGMR072869_CGC15
🧬 Cluster Details
- Gene Count: 16
- CAZyme Count: 2
- Substrate:
- Genome ID: CGMR072869
- CGC Family ID: CGCFAM_00473
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | k141_270327 | k141_270327_2 | 647 | 1642 | + | 9.B.97.1.1 |
| TC | k141_270327 | k141_270327_3 | 1639 | 2004 | - | 9.B.44.1.1 |
| pfam | k141_270327 | k141_270327_4 | 2173 | 3627 | - | FGGY_N | FGGY_C |
| NULL(UNKNOWN) | k141_270327 | k141_270327_5 | 3700 | 5022 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | k141_270327 | k141_270327_6 | 5387 | 6379 | + | 3.A.1.2.4 |
| TC | k141_270327 | k141_270327_7 | 6489 | 8030 | + | 3.A.1.2.4 |
| TC | k141_270327 | k141_270327_8 | 8008 | 9189 | + | 3.A.1.2.4 |
| TF | k141_270327 | k141_270327_9 | 9270 | 10448 | + | HTH_AraC | HTH_AraC |
| CAZyme | k141_270327 | k141_270327_10 | 10518 | 11342 | - | GH73 |
| CAZyme | k141_270327 | k141_270327_11 | 11659 | 13689 | + | GH13_19 |
| STP | k141_270327 | k141_270327_12 | 13824 | 15116 | + | Aminotran_1_2 |
| TC | k141_270327 | k141_270327_13 | 15153 | 15626 | - | 5.A.3.3.1 |
| TC | k141_270327 | k141_270327_14 | 16038 | 16778 | - | 9.B.99.1.1 |
| TF | k141_270327 | k141_270327_15 | 16900 | 17853 | + | HTH_1 |
| TC | k141_270327 | k141_270327_16 | 17883 | 19019 | - | 8.A.1.1.4 |
| TC | k141_270327 | k141_270327_17 | 19025 | 19348 | - | 9.B.32.1.2 |
Gene ID: k141_270327_2
Type: TC
Location: 647 - 1642 (+)
Type: TC
Location: 647 - 1642 (+)
Gene ID: k141_270327_3
Type: TC
Location: 1639 - 2004 (-)
Type: TC
Location: 1639 - 2004 (-)
Gene ID: k141_270327_4
Type: pfam
Location: 2173 - 3627 (-)
Type: pfam
Location: 2173 - 3627 (-)
Gene ID: k141_270327_5
Type:
Location: 3700 - 5022 (-)
Type:
Location: 3700 - 5022 (-)
Gene ID: k141_270327_6
Type: TC
Location: 5387 - 6379 (+)
Type: TC
Location: 5387 - 6379 (+)
Gene ID: k141_270327_7
Type: TC
Location: 6489 - 8030 (+)
Type: TC
Location: 6489 - 8030 (+)
Gene ID: k141_270327_8
Type: TC
Location: 8008 - 9189 (+)
Type: TC
Location: 8008 - 9189 (+)
Gene ID: k141_270327_9
Type: TF
Location: 9270 - 10448 (+)
Type: TF
Location: 9270 - 10448 (+)
Gene ID: k141_270327_10
Type: CAZyme
Location: 10518 - 11342 (-)
Type: CAZyme
Location: 10518 - 11342 (-)
Gene ID: k141_270327_11
Type: CAZyme
Location: 11659 - 13689 (+)
Type: CAZyme
Location: 11659 - 13689 (+)
Gene ID: k141_270327_12
Type: STP
Location: 13824 - 15116 (+)
Type: STP
Location: 13824 - 15116 (+)
Gene ID: k141_270327_13
Type: TC
Location: 15153 - 15626 (-)
Type: TC
Location: 15153 - 15626 (-)
Gene ID: k141_270327_14
Type: TC
Location: 16038 - 16778 (-)
Type: TC
Location: 16038 - 16778 (-)
Gene ID: k141_270327_15
Type: TF
Location: 16900 - 17853 (+)
Type: TF
Location: 16900 - 17853 (+)
Gene ID: k141_270327_16
Type: TC
Location: 17883 - 19019 (-)
Type: TC
Location: 17883 - 19019 (-)
Gene ID: k141_270327_17
Type: TC
Location: 19025 - 19348 (-)
Type: TC
Location: 19025 - 19348 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Species
Citrobacter sp001037495
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.