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Cluster: CGMR071940_CGC3

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC k141_287454 k141_287454_18 15603 16220 - 1.A.30.2.4
TC k141_287454 k141_287454_19 16256 21334 - 1.B.14.1.4
TF k141_287454 k141_287454_20 21579 22559 - HTH_AraC | HTH_AraC
pfam k141_287454 k141_287454_21 22690 23091 - DUF454
TC k141_287454 k141_287454_22 23088 24455 - 4.A.7.1.4
TC k141_287454 k141_287454_23 24490 24765 - 4.A.7.1.2
TC k141_287454 k141_287454_24 24892 25344 - 4.A.7.1.1
TC k141_287454 k141_287454_25 25620 26627 + 3.A.1.14.19
TC k141_287454 k141_287454_26 26657 27403 + 3.A.1.14.8
STP k141_287454 k141_287454_27 27422 28426 + Peripla_BP_2
NULL(UNKNOWN) k141_287454 k141_287454_28 28649 28813 - NULL(UNKNOWN)
[View Structural Homologs]
TC k141_287454 k141_287454_29 29268 31418 + 3.A.9.1.2
TC k141_287454 k141_287454_30 31605 32603 - 2.A.20.1.5
pfam k141_287454 k141_287454_31 32596 33225 - PhoU_div
STP k141_287454 k141_287454_32 33430 34899 - Fer4
TC k141_287454 k141_287454_33 34960 37017 - 3.A.1.120.6
NULL(UNKNOWN) k141_287454 k141_287454_34 37134 37454 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme k141_287454 k141_287454_35 37547 38017 - GT28
Gene ID: k141_287454_18
Type: TC
Location: 15603 - 16220 (-)
Gene ID: k141_287454_19
Type: TC
Location: 16256 - 21334 (-)
Gene ID: k141_287454_20
Type: TF
Location: 21579 - 22559 (-)
Gene ID: k141_287454_21
Type: pfam
Location: 22690 - 23091 (-)
Gene ID: k141_287454_22
Type: TC
Location: 23088 - 24455 (-)
Gene ID: k141_287454_23
Type: TC
Location: 24490 - 24765 (-)
Gene ID: k141_287454_24
Type: TC
Location: 24892 - 25344 (-)
Gene ID: k141_287454_25
Type: TC
Location: 25620 - 26627 (+)
Gene ID: k141_287454_26
Type: TC
Location: 26657 - 27403 (+)
Gene ID: k141_287454_27
Type: STP
Location: 27422 - 28426 (+)
Gene ID: k141_287454_28
Type:
Location: 28649 - 28813 (-)
Gene ID: k141_287454_29
Type: TC
Location: 29268 - 31418 (+)
Gene ID: k141_287454_30
Type: TC
Location: 31605 - 32603 (-)
Gene ID: k141_287454_31
Type: pfam
Location: 32596 - 33225 (-)
Gene ID: k141_287454_32
Type: STP
Location: 33430 - 34899 (-)
Gene ID: k141_287454_33
Type: TC
Location: 34960 - 37017 (-)
Gene ID: k141_287454_34
Type:
Location: 37134 - 37454 (+)
Gene ID: k141_287454_35
Type: CAZyme
Location: 37547 - 38017 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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