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Cluster: CGMR071836_CGC11

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC k141_29265 k141_29265_46 53708 55012 - 2.A.66.1.37
TF k141_29265 k141_29265_47 55103 55909 + MerR
pfam k141_29265 k141_29265_48 55957 57366 - AA_permease | AA_permease_2
CAZyme k141_29265 k141_29265_49 57382 59508 - GH13_20
TF k141_29265 k141_29265_50 59849 60301 + HTH_3
pfam k141_29265 k141_29265_51 60314 60817 + GreA_GreB | GreA_GreB_N
TC k141_29265 k141_29265_52 60868 62058 - 2.A.36.2.1
pfam k141_29265 k141_29265_53 62258 63577 - SLH | SLH | SLH | Cadherin_4 | Cadherin_5 | Big_9
TC k141_29265 k141_29265_54 63678 64868 - 2.A.103.1.3
Gene ID: k141_29265_46
Type: TC
Location: 53708 - 55012 (-)
Gene ID: k141_29265_47
Type: TF
Location: 55103 - 55909 (+)
Gene ID: k141_29265_48
Type: pfam
Location: 55957 - 57366 (-)
Gene ID: k141_29265_49
Type: CAZyme
Location: 57382 - 59508 (-)
Gene ID: k141_29265_50
Type: TF
Location: 59849 - 60301 (+)
Gene ID: k141_29265_51
Type: pfam
Location: 60314 - 60817 (+)
Gene ID: k141_29265_52
Type: TC
Location: 60868 - 62058 (-)
Gene ID: k141_29265_53
Type: pfam
Location: 62258 - 63577 (-)
Gene ID: k141_29265_54
Type: TC
Location: 63678 - 64868 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
k141_29265_50 vegetarian > vegan 1.10415 0.01057

🧭 Explore Read Mapping of CGC

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