Cluster: CGMR071451_CGC3
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 6
- Substrate:
- Genome ID: CGMR071451
- CGC Family ID: CGCFAM_06495
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | k141_242929 | k141_242929_2 | 813 | 2018 | - | 3.D.2.1.1 |
| STP | k141_242929 | k141_242929_3 | 2015 | 2512 | - | SKI |
| pfam | k141_242929 | k141_242929_4 | 3065 | 3712 | + | RNase_H | Cauli_VI |
| CAZyme | k141_242929 | k141_242929_5 | 3719 | 4705 | - | GT2 |
| CAZyme | k141_242929 | k141_242929_6 | 4976 | 6163 | + | GT4 |
| CAZyme | k141_242929 | k141_242929_7 | 6153 | 6986 | + | GT2 |
| CAZyme | k141_242929 | k141_242929_8 | 7104 | 7865 | + | GT2 |
| pfam | k141_242929 | k141_242929_9 | 7893 | 8645 | - | Kdo |
| CAZyme | k141_242929 | k141_242929_10 | 8679 | 9512 | - | GT2 |
| CAZyme | k141_242929 | k141_242929_11 | 9542 | 10564 | - | GT9 |
| pfam | k141_242929 | k141_242929_12 | 10571 | 11260 | - | DUF4254 |
| pfam | k141_242929 | k141_242929_13 | 11297 | 12406 | + | 2-Hacid_dh | 2-Hacid_dh_C | DUF3410 |
| TC | k141_242929 | k141_242929_14 | 12652 | 12888 | + | 3.D.1.6.3 |
Gene ID: k141_242929_2
Type: TC
Location: 813 - 2018 (-)
Type: TC
Location: 813 - 2018 (-)
Gene ID: k141_242929_3
Type: STP
Location: 2015 - 2512 (-)
Type: STP
Location: 2015 - 2512 (-)
Gene ID: k141_242929_4
Type: pfam
Location: 3065 - 3712 (+)
Type: pfam
Location: 3065 - 3712 (+)
Gene ID: k141_242929_5
Type: CAZyme
Location: 3719 - 4705 (-)
Type: CAZyme
Location: 3719 - 4705 (-)
Gene ID: k141_242929_6
Type: CAZyme
Location: 4976 - 6163 (+)
Type: CAZyme
Location: 4976 - 6163 (+)
Gene ID: k141_242929_7
Type: CAZyme
Location: 6153 - 6986 (+)
Type: CAZyme
Location: 6153 - 6986 (+)
Gene ID: k141_242929_8
Type: CAZyme
Location: 7104 - 7865 (+)
Type: CAZyme
Location: 7104 - 7865 (+)
Gene ID: k141_242929_9
Type: pfam
Location: 7893 - 8645 (-)
Type: pfam
Location: 7893 - 8645 (-)
Gene ID: k141_242929_10
Type: CAZyme
Location: 8679 - 9512 (-)
Type: CAZyme
Location: 8679 - 9512 (-)
Gene ID: k141_242929_11
Type: CAZyme
Location: 9542 - 10564 (-)
Type: CAZyme
Location: 9542 - 10564 (-)
Gene ID: k141_242929_12
Type: pfam
Location: 10571 - 11260 (-)
Type: pfam
Location: 10571 - 11260 (-)
Gene ID: k141_242929_13
Type: pfam
Location: 11297 - 12406 (+)
Type: pfam
Location: 11297 - 12406 (+)
Gene ID: k141_242929_14
Type: TC
Location: 12652 - 12888 (+)
Type: TC
Location: 12652 - 12888 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Tannerellaceae
Genus
UBA12018
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.