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Cluster: CGMR071268_CGC6

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC k141_42724 k141_42724_5 5403 6266 - 3.A.1.1.45
TC k141_42724 k141_42724_6 6272 7186 - 3.A.1.1.4
NULL(UNKNOWN) k141_42724 k141_42724_7 7299 8627 - NULL(UNKNOWN)
[View Structural Homologs]
TF k141_42724 k141_42724_8 8719 9732 - LacI
CAZyme k141_42724 k141_42724_9 10145 12580 + GH94
pfam k141_42724 k141_42724_10 12577 13698 - tRNA_Me_trans | tRNA_Me_trans_C | tRNA_Me_trans_M
NULL(UNKNOWN) k141_42724 k141_42724_11 13940 14092 + NULL(UNKNOWN)
[View Structural Homologs]
TC k141_42724 k141_42724_12 14318 15226 + 3.A.1.24.5
TC k141_42724 k141_42724_13 15264 16274 + 3.A.1.24.2
TC k141_42724 k141_42724_14 16264 16926 + 3.A.1.24.5
pfam k141_42724 k141_42724_15 17255 18967 - ABC_ATPase | ABC_N | MRB1590_C
peptidase k141_42724 k141_42724_16 19291 20682 + M18.UPW
TC k141_42724 k141_42724_17 20708 21421 + 3.A.1.122.7
pfam k141_42724 k141_42724_18 21418 23235 + HlyD_3 | HlyD_D23
TC k141_42724 k141_42724_19 23235 24467 + 3.A.1.122.2
Gene ID: k141_42724_5
Type: TC
Location: 5403 - 6266 (-)
Gene ID: k141_42724_6
Type: TC
Location: 6272 - 7186 (-)
Gene ID: k141_42724_7
Type:
Location: 7299 - 8627 (-)
Gene ID: k141_42724_8
Type: TF
Location: 8719 - 9732 (-)
Gene ID: k141_42724_9
Type: CAZyme
Location: 10145 - 12580 (+)
Gene ID: k141_42724_10
Type: pfam
Location: 12577 - 13698 (-)
Gene ID: k141_42724_11
Type:
Location: 13940 - 14092 (+)
Gene ID: k141_42724_12
Type: TC
Location: 14318 - 15226 (+)
Gene ID: k141_42724_13
Type: TC
Location: 15264 - 16274 (+)
Gene ID: k141_42724_14
Type: TC
Location: 16264 - 16926 (+)
Gene ID: k141_42724_15
Type: pfam
Location: 17255 - 18967 (-)
Gene ID: k141_42724_16
Type: peptidase
Location: 19291 - 20682 (+)
Gene ID: k141_42724_17
Type: TC
Location: 20708 - 21421 (+)
Gene ID: k141_42724_18
Type: pfam
Location: 21418 - 23235 (+)
Gene ID: k141_42724_19
Type: TC
Location: 23235 - 24467 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
k141_42724_6 vegetarian > vegan 1.30169 0.00066
k141_42724_7 vegetarian > vegan 1.64787 0.00066
k141_42724_13 vegetarian > omnivore 1.02927 0.02572

🧭 Explore Read Mapping of CGC

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