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Cluster: CGMR071268_CGC17

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme k141_109531 k141_109531_23 24820 26010 - GH172
TF k141_109531 k141_109531_24 26057 27106 - LacI
pfam k141_109531 k141_109531_25 27129 29609 - Bac_rhamnosid6H | MGH1-like_GH
TC k141_109531 k141_109531_26 29622 30428 - 3.A.1.1.36
TC k141_109531 k141_109531_27 30433 31326 - 3.A.1.1.20
STP k141_109531 k141_109531_28 31347 32591 - SBP_bac_1
CAZyme k141_109531 k141_109531_29 32629 33981 - GH172
Gene ID: k141_109531_23
Type: CAZyme
Location: 24820 - 26010 (-)
Gene ID: k141_109531_24
Type: TF
Location: 26057 - 27106 (-)
Gene ID: k141_109531_25
Type: pfam
Location: 27129 - 29609 (-)
Gene ID: k141_109531_26
Type: TC
Location: 29622 - 30428 (-)
Gene ID: k141_109531_27
Type: TC
Location: 30433 - 31326 (-)
Gene ID: k141_109531_28
Type: STP
Location: 31347 - 32591 (-)
Gene ID: k141_109531_29
Type: CAZyme
Location: 32629 - 33981 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
k141_109531_23 vegan > omnivore 1.21198 0.03401

🧭 Explore Read Mapping of CGC

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