Cluster: CGMR071084_CGC2
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 7
- Substrate:
- Genome ID: CGMR071084
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | k141_16069 | k141_16069_9 | 6469 | 8880 | - | GH94 |
| CAZyme | k141_16069 | k141_16069_10 | 8908 | 11607 | - | GH94 |
| NULL(UNKNOWN) | k141_16069 | k141_16069_11 | 11854 | 13230 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | k141_16069 | k141_16069_12 | 13303 | 14250 | + | 3.A.1.1.4 |
| TC | k141_16069 | k141_16069_13 | 14254 | 15099 | + | 3.A.1.1.20 |
| CAZyme | k141_16069 | k141_16069_14 | 15226 | 17676 | + | GH3 |
| CAZyme | k141_16069 | k141_16069_15 | 17680 | 21102 | + | CBM4 | CBM4 | CBM4 | GH16_3 |
| pfam | k141_16069 | k141_16069_16 | 21239 | 22921 | + | PGM_PMM_I | PGM_PMM_II | PGM_PMM_III |
| CAZyme | k141_16069 | k141_16069_17 | 23513 | 28288 | + | GH29 |
| CAZyme | k141_16069 | k141_16069_18 | 28653 | 33686 | + | CBM32 | CBM32 | GH20 |
| TF | k141_16069 | k141_16069_19 | 33850 | 34932 | + | LacI |
| TC | k141_16069 | k141_16069_20 | 35306 | 37237 | + | 4.A.1.2.12 |
| CAZyme | k141_16069 | k141_16069_21 | 37324 | 38742 | + | GH32 |
Gene ID: k141_16069_9
Type: CAZyme
Location: 6469 - 8880 (-)
Type: CAZyme
Location: 6469 - 8880 (-)
Gene ID: k141_16069_10
Type: CAZyme
Location: 8908 - 11607 (-)
Type: CAZyme
Location: 8908 - 11607 (-)
Gene ID: k141_16069_11
Type:
Location: 11854 - 13230 (+)
Type:
Location: 11854 - 13230 (+)
Gene ID: k141_16069_12
Type: TC
Location: 13303 - 14250 (+)
Type: TC
Location: 13303 - 14250 (+)
Gene ID: k141_16069_13
Type: TC
Location: 14254 - 15099 (+)
Type: TC
Location: 14254 - 15099 (+)
Gene ID: k141_16069_14
Type: CAZyme
Location: 15226 - 17676 (+)
Type: CAZyme
Location: 15226 - 17676 (+)
Gene ID: k141_16069_15
Type: CAZyme
Location: 17680 - 21102 (+)
Type: CAZyme
Location: 17680 - 21102 (+)
Gene ID: k141_16069_16
Type: pfam
Location: 21239 - 22921 (+)
Type: pfam
Location: 21239 - 22921 (+)
Gene ID: k141_16069_17
Type: CAZyme
Location: 23513 - 28288 (+)
Type: CAZyme
Location: 23513 - 28288 (+)
Gene ID: k141_16069_18
Type: CAZyme
Location: 28653 - 33686 (+)
Type: CAZyme
Location: 28653 - 33686 (+)
Gene ID: k141_16069_19
Type: TF
Location: 33850 - 34932 (+)
Type: TF
Location: 33850 - 34932 (+)
Gene ID: k141_16069_20
Type: TC
Location: 35306 - 37237 (+)
Type: TC
Location: 35306 - 37237 (+)
Gene ID: k141_16069_21
Type: CAZyme
Location: 37324 - 38742 (+)
Type: CAZyme
Location: 37324 - 38742 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Mediterraneibacter
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| k141_16069_13 | vegan > omnivore | 2.20710 | 0.02445 |