Cluster: CGMR069911_CGC9
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: CGMR069911
- CGC Family ID: CGCFAM_08922
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | k141_38412 | k141_38412_17 | 17557 | 18939 | - | 2.A.66.1.12 |
| pfam | k141_38412 | k141_38412_18 | 19111 | 20253 | + | 2-Hacid_dh | 2-Hacid_dh_C | DUF3410 |
| NULL(UNKNOWN) | k141_38412 | k141_38412_19 | 20414 | 20587 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | k141_38412 | k141_38412_20 | 20832 | 22601 | + | 3.A.1.201.8 |
| CAZyme | k141_38412 | k141_38412_21 | 22735 | 24663 | - | GH23 |
| TC | k141_38412 | k141_38412_22 | 24877 | 26451 | + | 3.A.1.120.6 |
Gene ID: k141_38412_17
Type: TC
Location: 17557 - 18939 (-)
Type: TC
Location: 17557 - 18939 (-)
Gene ID: k141_38412_18
Type: pfam
Location: 19111 - 20253 (+)
Type: pfam
Location: 19111 - 20253 (+)
Gene ID: k141_38412_19
Type:
Location: 20414 - 20587 (-)
Type:
Location: 20414 - 20587 (-)
Gene ID: k141_38412_20
Type: TC
Location: 20832 - 22601 (+)
Type: TC
Location: 20832 - 22601 (+)
Gene ID: k141_38412_21
Type: CAZyme
Location: 22735 - 24663 (-)
Type: CAZyme
Location: 22735 - 24663 (-)
Gene ID: k141_38412_22
Type: TC
Location: 24877 - 26451 (+)
Type: TC
Location: 24877 - 26451 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas_E
Species
Pseudomonas_E lactis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.