Cluster: CGMR069911_CGC28
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate: alginate
- Genome ID: CGMR069911
- CGC Family ID: CGCFAM_01485
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | k141_47431 | k141_47431_3 | 1532 | 2641 | - | PL5_1 |
| pfam | k141_47431 | k141_47431_4 | 2650 | 4107 | - | ALGX | CBM_26 |
| pfam | k141_47431 | k141_47431_5 | 4110 | 5663 | - | NosD | NosD | Beta_helix |
| TC | k141_47431 | k141_47431_6 | 5678 | 7168 | - | 1.B.13.1.1 |
| pfam | k141_47431 | k141_47431_7 | 7165 | 8679 | - | Sel1 | Sel1 | Sel1 |
| pfam | k141_47431 | k141_47431_8 | 8694 | 9860 | - | PilZ | HlyD_3 |
| TC | k141_47431 | k141_47431_9 | 9898 | 10452 | - | 4.D.1.1.9 |
Gene ID: k141_47431_3
Type: CAZyme
Location: 1532 - 2641 (-)
Type: CAZyme
Location: 1532 - 2641 (-)
Gene ID: k141_47431_4
Type: pfam
Location: 2650 - 4107 (-)
Type: pfam
Location: 2650 - 4107 (-)
Gene ID: k141_47431_5
Type: pfam
Location: 4110 - 5663 (-)
Type: pfam
Location: 4110 - 5663 (-)
Gene ID: k141_47431_6
Type: TC
Location: 5678 - 7168 (-)
Type: TC
Location: 5678 - 7168 (-)
Gene ID: k141_47431_7
Type: pfam
Location: 7165 - 8679 (-)
Type: pfam
Location: 7165 - 8679 (-)
Gene ID: k141_47431_8
Type: pfam
Location: 8694 - 9860 (-)
Type: pfam
Location: 8694 - 9860 (-)
Gene ID: k141_47431_9
Type: TC
Location: 9898 - 10452 (-)
Type: TC
Location: 9898 - 10452 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas_E
Species
Pseudomonas_E lactis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.