Cluster: CGMR069911_CGC21
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 1
- Substrate:
- Genome ID: CGMR069911
- CGC Family ID: CGCFAM_03893
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | k141_48949 | k141_48949_9 | 8061 | 9254 | + | GH102 |
| pfam | k141_48949 | k141_48949_10 | 9419 | 9805 | - | MAPEG |
| TC | k141_48949 | k141_48949_11 | 9835 | 10668 | - | 2.A.7.31.3 |
| TC | k141_48949 | k141_48949_12 | 10772 | 12007 | + | 2.A.36.6.8 |
| TF | k141_48949 | k141_48949_13 | 11991 | 12866 | - | HTH_1 |
| STP | k141_48949 | k141_48949_14 | 12959 | 13372 | + | Glyoxalase |
| TC | k141_48949 | k141_48949_15 | 13407 | 14696 | + | 2.A.23.1.1 |
| TC | k141_48949 | k141_48949_16 | 14716 | 15606 | - | 1.A.16.4.1 |
Gene ID: k141_48949_9
Type: CAZyme
Location: 8061 - 9254 (+)
Type: CAZyme
Location: 8061 - 9254 (+)
Gene ID: k141_48949_10
Type: pfam
Location: 9419 - 9805 (-)
Type: pfam
Location: 9419 - 9805 (-)
Gene ID: k141_48949_11
Type: TC
Location: 9835 - 10668 (-)
Type: TC
Location: 9835 - 10668 (-)
Gene ID: k141_48949_12
Type: TC
Location: 10772 - 12007 (+)
Type: TC
Location: 10772 - 12007 (+)
Gene ID: k141_48949_13
Type: TF
Location: 11991 - 12866 (-)
Type: TF
Location: 11991 - 12866 (-)
Gene ID: k141_48949_14
Type: STP
Location: 12959 - 13372 (+)
Type: STP
Location: 12959 - 13372 (+)
Gene ID: k141_48949_15
Type: TC
Location: 13407 - 14696 (+)
Type: TC
Location: 13407 - 14696 (+)
Gene ID: k141_48949_16
Type: TC
Location: 14716 - 15606 (-)
Type: TC
Location: 14716 - 15606 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas_E
Species
Pseudomonas_E lactis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.