Cluster: CGMR069911_CGC20
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: CGMR069911
- CGC Family ID: CGCFAM_08918
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | k141_4486 | k141_4486_6 | 6284 | 9019 | - | 3.A.5.1.1 |
| pfam | k141_4486 | k141_4486_7 | 9326 | 9781 | + | DciA |
| pfam | k141_4486 | k141_4486_8 | 9786 | 11264 | - | DUF87 | HerA_C |
| TC | k141_4486 | k141_4486_9 | 11470 | 13359 | + | 1.B.52.2.1 |
| CAZyme | k141_4486 | k141_4486_10 | 13567 | 14688 | + | GT4 |
Gene ID: k141_4486_6
Type: TC
Location: 6284 - 9019 (-)
Type: TC
Location: 6284 - 9019 (-)
Gene ID: k141_4486_7
Type: pfam
Location: 9326 - 9781 (+)
Type: pfam
Location: 9326 - 9781 (+)
Gene ID: k141_4486_8
Type: pfam
Location: 9786 - 11264 (-)
Type: pfam
Location: 9786 - 11264 (-)
Gene ID: k141_4486_9
Type: TC
Location: 11470 - 13359 (+)
Type: TC
Location: 11470 - 13359 (+)
Gene ID: k141_4486_10
Type: CAZyme
Location: 13567 - 14688 (+)
Type: CAZyme
Location: 13567 - 14688 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas_E
Species
Pseudomonas_E lactis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.