Cluster: CGMR069911_CGC18
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate:
- Genome ID: CGMR069911
- CGC Family ID: CGCFAM_00294
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | k141_13542 | k141_13542_1 | 3 | 377 | - | 1.C.75.1.3 |
| TC | k141_13542 | k141_13542_2 | 408 | 2129 | - | 1.B.20.1.3 |
| pfam | k141_13542 | k141_13542_3 | 2585 | 3061 | - | PgaD |
| CAZyme | k141_13542 | k141_13542_4 | 3064 | 4404 | - | GT2 |
| CAZyme | k141_13542 | k141_13542_5 | 4407 | 6404 | - | CE4 | GH153 |
| TC | k141_13542 | k141_13542_6 | 6417 | 8897 | - | 1.B.55.1.1 |
Gene ID: k141_13542_1
Type: TC
Location: 3 - 377 (-)
Type: TC
Location: 3 - 377 (-)
Gene ID: k141_13542_2
Type: TC
Location: 408 - 2129 (-)
Type: TC
Location: 408 - 2129 (-)
Gene ID: k141_13542_3
Type: pfam
Location: 2585 - 3061 (-)
Type: pfam
Location: 2585 - 3061 (-)
Gene ID: k141_13542_4
Type: CAZyme
Location: 3064 - 4404 (-)
Type: CAZyme
Location: 3064 - 4404 (-)
Gene ID: k141_13542_5
Type: CAZyme
Location: 4407 - 6404 (-)
Type: CAZyme
Location: 4407 - 6404 (-)
Gene ID: k141_13542_6
Type: TC
Location: 6417 - 8897 (-)
Type: TC
Location: 6417 - 8897 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas_E
Species
Pseudomonas_E lactis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.