Cluster: CGMR069136_CGC9
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 5
- Substrate:
- Genome ID: CGMR069136
- CGC Family ID: CGCFAM_00011
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | k141_193119 | k141_193119_30 | 40481 | 41149 | - | 3.A.1.103.5 |
| CAZyme | k141_193119 | k141_193119_31 | 41272 | 42234 | + | GT81 |
| CAZyme | k141_193119 | k141_193119_32 | 42350 | 43585 | - | GT4 |
| CAZyme | k141_193119 | k141_193119_33 | 43607 | 44665 | - | GT2 |
| CAZyme | k141_193119 | k141_193119_34 | 44674 | 45789 | - | GT2 |
| TC | k141_193119 | k141_193119_35 | 45791 | 46546 | - | 3.A.1.103.1 |
| TC | k141_193119 | k141_193119_36 | 46556 | 47368 | - | 3.A.1.103.4 |
| CAZyme | k141_193119 | k141_193119_37 | 47526 | 48662 | - | GT2 |
Gene ID: k141_193119_30
Type: TC
Location: 40481 - 41149 (-)
Type: TC
Location: 40481 - 41149 (-)
Gene ID: k141_193119_31
Type: CAZyme
Location: 41272 - 42234 (+)
Type: CAZyme
Location: 41272 - 42234 (+)
Gene ID: k141_193119_32
Type: CAZyme
Location: 42350 - 43585 (-)
Type: CAZyme
Location: 42350 - 43585 (-)
Gene ID: k141_193119_33
Type: CAZyme
Location: 43607 - 44665 (-)
Type: CAZyme
Location: 43607 - 44665 (-)
Gene ID: k141_193119_34
Type: CAZyme
Location: 44674 - 45789 (-)
Type: CAZyme
Location: 44674 - 45789 (-)
Gene ID: k141_193119_35
Type: TC
Location: 45791 - 46546 (-)
Type: TC
Location: 45791 - 46546 (-)
Gene ID: k141_193119_36
Type: TC
Location: 46556 - 47368 (-)
Type: TC
Location: 46556 - 47368 (-)
Gene ID: k141_193119_37
Type: CAZyme
Location: 47526 - 48662 (-)
Type: CAZyme
Location: 47526 - 48662 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| k141_193119_32 | vegetarian > omnivore | 1.71163 | 0.02531 |
| k141_193119_32 | vegetarian > vegan | 2.80829 | 0.02243 |
| k141_193119_34 | vegetarian > omnivore | 2.12981 | 0.02531 |
| k141_193119_36 | vegetarian > vegan | 2.76291 | 0.02243 |
| k141_193119_37 | vegetarian > vegan | 2.59032 | 0.02243 |