Cluster: CGMR069136_CGC17
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 1
- Substrate:
- Genome ID: CGMR069136
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | k141_10585 | k141_10585_143 | 160721 | 161938 | - | GT4 |
| pfam | k141_10585 | k141_10585_144 | 161953 | 162717 | - | BcrAD_BadFG |
| pfam | k141_10585 | k141_10585_145 | 162768 | 163931 | - | HGD-D |
| TC | k141_10585 | k141_10585_146 | 164008 | 164793 | - | 3.A.1.5.36 |
| TC | k141_10585 | k141_10585_147 | 164783 | 165778 | - | 3.A.1.5.37 |
| TC | k141_10585 | k141_10585_148 | 165782 | 166612 | - | 3.A.1.5.39 |
| TC | k141_10585 | k141_10585_149 | 166609 | 167562 | - | 3.A.1.5.11 |
| TC | k141_10585 | k141_10585_150 | 167651 | 169261 | - | 3.A.1.5.11 |
| pfam | k141_10585 | k141_10585_151 | 169446 | 170729 | - | HGD-D |
| TC | k141_10585 | k141_10585_152 | 171157 | 172227 | - | 3.A.1.1.3 |
| TC | k141_10585 | k141_10585_153 | 172231 | 173673 | - | 3.A.1.8.1 |
Gene ID: k141_10585_143
Type: CAZyme
Location: 160721 - 161938 (-)
Type: CAZyme
Location: 160721 - 161938 (-)
Gene ID: k141_10585_144
Type: pfam
Location: 161953 - 162717 (-)
Type: pfam
Location: 161953 - 162717 (-)
Gene ID: k141_10585_145
Type: pfam
Location: 162768 - 163931 (-)
Type: pfam
Location: 162768 - 163931 (-)
Gene ID: k141_10585_146
Type: TC
Location: 164008 - 164793 (-)
Type: TC
Location: 164008 - 164793 (-)
Gene ID: k141_10585_147
Type: TC
Location: 164783 - 165778 (-)
Type: TC
Location: 164783 - 165778 (-)
Gene ID: k141_10585_148
Type: TC
Location: 165782 - 166612 (-)
Type: TC
Location: 165782 - 166612 (-)
Gene ID: k141_10585_149
Type: TC
Location: 166609 - 167562 (-)
Type: TC
Location: 166609 - 167562 (-)
Gene ID: k141_10585_150
Type: TC
Location: 167651 - 169261 (-)
Type: TC
Location: 167651 - 169261 (-)
Gene ID: k141_10585_151
Type: pfam
Location: 169446 - 170729 (-)
Type: pfam
Location: 169446 - 170729 (-)
Gene ID: k141_10585_152
Type: TC
Location: 171157 - 172227 (-)
Type: TC
Location: 171157 - 172227 (-)
Gene ID: k141_10585_153
Type: TC
Location: 172231 - 173673 (-)
Type: TC
Location: 172231 - 173673 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| k141_10585_143 | vegan > omnivore | 1.52221 | 0.00863 |
| k141_10585_146 | vegan > omnivore | 2.64941 | 0.00863 |
| k141_10585_148 | vegan > omnivore | 2.91490 | 0.00863 |
| k141_10585_148 | vegetarian > omnivore | 1.21035 | 0.02531 |
| k141_10585_149 | vegan > omnivore | 2.77524 | 0.00863 |
| k141_10585_149 | vegetarian > omnivore | 1.18456 | 0.02531 |
| k141_10585_150 | vegan > omnivore | 3.33644 | 0.00863 |
| k141_10585_150 | vegetarian > omnivore | 1.13631 | 0.02531 |