Cluster: CGMR067593_CGC17
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate:
- Genome ID: CGMR067593
- CGC Family ID: CGCFAM_08899
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | k141_31247 | k141_31247_18 | 18987 | 20450 | + | 2.A.6.2.26 |
| NULL(UNKNOWN) | k141_31247 | k141_31247_19 | 20450 | 20869 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | k141_31247 | k141_31247_20 | 20965 | 22257 | - | GT30 |
| pfam | k141_31247 | k141_31247_21 | 22318 | 23247 | + | Lip_A_acyltrans |
| pfam | k141_31247 | k141_31247_22 | 23258 | 24595 | - | Wzy_C |
| CAZyme | k141_31247 | k141_31247_23 | 24570 | 25691 | - | GT4 |
Gene ID: k141_31247_18
Type: TC
Location: 18987 - 20450 (+)
Type: TC
Location: 18987 - 20450 (+)
Gene ID: k141_31247_19
Type:
Location: 20450 - 20869 (+)
Type:
Location: 20450 - 20869 (+)
Gene ID: k141_31247_20
Type: CAZyme
Location: 20965 - 22257 (-)
Type: CAZyme
Location: 20965 - 22257 (-)
Gene ID: k141_31247_21
Type: pfam
Location: 22318 - 23247 (+)
Type: pfam
Location: 22318 - 23247 (+)
Gene ID: k141_31247_22
Type: pfam
Location: 23258 - 24595 (-)
Type: pfam
Location: 23258 - 24595 (-)
Gene ID: k141_31247_23
Type: CAZyme
Location: 24570 - 25691 (-)
Type: CAZyme
Location: 24570 - 25691 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Xanthomonadales
Family
Xanthomonadaceae
Genus
Pseudoxanthomonas_B
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.