Cluster: CGMR067429_CGC16
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 3
- Substrate:
- Genome ID: CGMR067429
- CGC Family ID: CGCFAM_00002
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | k141_199610 | k141_199610_4 | 2896 | 3840 | - | GT2 |
| CAZyme | k141_199610 | k141_199610_5 | 3858 | 5075 | - | GT4 |
| STP | k141_199610 | k141_199610_6 | 5068 | 6273 | - | Fer4 | Fer4 |
| pfam | k141_199610 | k141_199610_7 | 6286 | 7404 | - | PS_pyruv_trans |
| CAZyme | k141_199610 | k141_199610_8 | 7404 | 8513 | - | GT4 |
| TC | k141_199610 | k141_199610_9 | 8514 | 9248 | - | 9.B.18.1.2 |
Gene ID: k141_199610_4
Type: CAZyme
Location: 2896 - 3840 (-)
Type: CAZyme
Location: 2896 - 3840 (-)
Gene ID: k141_199610_5
Type: CAZyme
Location: 3858 - 5075 (-)
Type: CAZyme
Location: 3858 - 5075 (-)
Gene ID: k141_199610_6
Type: STP
Location: 5068 - 6273 (-)
Type: STP
Location: 5068 - 6273 (-)
Gene ID: k141_199610_7
Type: pfam
Location: 6286 - 7404 (-)
Type: pfam
Location: 6286 - 7404 (-)
Gene ID: k141_199610_8
Type: CAZyme
Location: 7404 - 8513 (-)
Type: CAZyme
Location: 7404 - 8513 (-)
Gene ID: k141_199610_9
Type: TC
Location: 8514 - 9248 (-)
Type: TC
Location: 8514 - 9248 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.