Cluster: CGMR067390_CGC71
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 1
- Substrate:
- Genome ID: CGMR067390
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | k141_190601 | k141_190601_30 | 33489 | 34124 | - | 5.A.3.2.1 |
| TC | k141_190601 | k141_190601_31 | 34121 | 35023 | - | 5.A.3.2.1 |
| TC | k141_190601 | k141_190601_32 | 35036 | 37450 | - | 5.A.3.2.1 |
| TC | k141_190601 | k141_190601_33 | 37499 | 38086 | - | 5.A.3.2.1 |
| pfam | k141_190601 | k141_190601_34 | 38470 | 39306 | + | FdhD-NarQ |
| pfam | k141_190601 | k141_190601_35 | 39421 | 39633 | + | YdgH_BhsA-like |
| TC | k141_190601 | k141_190601_36 | 39675 | 39998 | - | 2.A.78.2.3 |
| TC | k141_190601 | k141_190601_37 | 39998 | 40657 | - | 2.A.78.2.3 |
| TF | k141_190601 | k141_190601_38 | 40762 | 41310 | + | HTH_3 |
| TF | k141_190601 | k141_190601_39 | 41328 | 42323 | + | LacI |
| CAZyme | k141_190601 | k141_190601_40 | 42428 | 44551 | + | GH36 |
| TC | k141_190601 | k141_190601_41 | 44596 | 45861 | + | 2.A.1.5.4 |
Gene ID: k141_190601_30
Type: TC
Location: 33489 - 34124 (-)
Type: TC
Location: 33489 - 34124 (-)
Gene ID: k141_190601_31
Type: TC
Location: 34121 - 35023 (-)
Type: TC
Location: 34121 - 35023 (-)
Gene ID: k141_190601_32
Type: TC
Location: 35036 - 37450 (-)
Type: TC
Location: 35036 - 37450 (-)
Gene ID: k141_190601_33
Type: TC
Location: 37499 - 38086 (-)
Type: TC
Location: 37499 - 38086 (-)
Gene ID: k141_190601_34
Type: pfam
Location: 38470 - 39306 (+)
Type: pfam
Location: 38470 - 39306 (+)
Gene ID: k141_190601_35
Type: pfam
Location: 39421 - 39633 (+)
Type: pfam
Location: 39421 - 39633 (+)
Gene ID: k141_190601_36
Type: TC
Location: 39675 - 39998 (-)
Type: TC
Location: 39675 - 39998 (-)
Gene ID: k141_190601_37
Type: TC
Location: 39998 - 40657 (-)
Type: TC
Location: 39998 - 40657 (-)
Gene ID: k141_190601_38
Type: TF
Location: 40762 - 41310 (+)
Type: TF
Location: 40762 - 41310 (+)
Gene ID: k141_190601_39
Type: TF
Location: 41328 - 42323 (+)
Type: TF
Location: 41328 - 42323 (+)
Gene ID: k141_190601_40
Type: CAZyme
Location: 42428 - 44551 (+)
Type: CAZyme
Location: 42428 - 44551 (+)
Gene ID: k141_190601_41
Type: TC
Location: 44596 - 45861 (+)
Type: TC
Location: 44596 - 45861 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Enterobacter
Species
Enterobacter ludwigii
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| k141_190601_34 | vegetarian > omnivore | 1.39846 | 0.03240 |
| k141_190601_35 | vegetarian > omnivore | 1.44363 | 0.03240 |
| k141_190601_36 | vegetarian > omnivore | 1.28488 | 0.03240 |
| k141_190601_37 | vegetarian > omnivore | 1.14798 | 0.03240 |
| k141_190601_39 | vegetarian > vegan | 1.58896 | 0.03740 |
| k141_190601_41 | vegetarian > omnivore | 1.80424 | 0.03240 |
| k141_190601_41 | vegetarian > vegan | 1.57806 | 0.03740 |