Cluster: CGMR067258_CGC78
🧬 Cluster Details
- Gene Count: 17
- CAZyme Count: 6
- Substrate:
- Genome ID: CGMR067258
- CGC Family ID: CGCFAM_02028
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | k141_215910 | k141_215910_6 | 3312 | 4184 | + | 2.A.64.1.3 |
| CAZyme | k141_215910 | k141_215910_7 | 4286 | 6502 | + | GH92 |
| sulfatase | k141_215910 | k141_215910_8 | 6587 | 7414 | - | S1_2 |
| peptidase | k141_215910 | k141_215910_9 | 7496 | 8512 | + | T02.UPW |
| CAZyme | k141_215910 | k141_215910_10 | 8869 | 9732 | - | CE1 |
| TC | k141_215910 | k141_215910_11 | 9869 | 12130 | + | 2.A.37.1.5 |
| pfam | k141_215910 | k141_215910_12 | 12238 | 13077 | + | DUF5032 |
| CAZyme | k141_215910 | k141_215910_13 | 13225 | 14391 | + | PL38 |
| CAZyme | k141_215910 | k141_215910_14 | 14441 | 15682 | + | GH88 |
| CAZyme | k141_215910 | k141_215910_15 | 15706 | 18174 | + | GH2 |
| TF | k141_215910 | k141_215910_16 | 18238 | 22350 | + | HTH_AraC |
| TC | k141_215910 | k141_215910_17 | 22511 | 25648 | + | 1.B.14.6.1 |
| pfam | k141_215910 | k141_215910_18 | 25673 | 27148 | + | SusD_RagB | SusD-like_3 |
| TC | k141_215910 | k141_215910_19 | 27233 | 31222 | + | 9.A.25.1.1 |
| CAZyme | k141_215910 | k141_215910_20 | 31230 | 32783 | + | PL29 |
| STP | k141_215910 | k141_215910_21 | 32994 | 33872 | + | FecR |
| TC | k141_215910 | k141_215910_22 | 34001 | 37375 | + | 1.B.14.6.1 |
Gene ID: k141_215910_6
Type: TC
Location: 3312 - 4184 (+)
Type: TC
Location: 3312 - 4184 (+)
Gene ID: k141_215910_7
Type: CAZyme
Location: 4286 - 6502 (+)
Type: CAZyme
Location: 4286 - 6502 (+)
Gene ID: k141_215910_8
Type: sulfatase
Location: 6587 - 7414 (-)
Type: sulfatase
Location: 6587 - 7414 (-)
Gene ID: k141_215910_9
Type: peptidase
Location: 7496 - 8512 (+)
Type: peptidase
Location: 7496 - 8512 (+)
Gene ID: k141_215910_10
Type: CAZyme
Location: 8869 - 9732 (-)
Type: CAZyme
Location: 8869 - 9732 (-)
Gene ID: k141_215910_11
Type: TC
Location: 9869 - 12130 (+)
Type: TC
Location: 9869 - 12130 (+)
Gene ID: k141_215910_12
Type: pfam
Location: 12238 - 13077 (+)
Type: pfam
Location: 12238 - 13077 (+)
Gene ID: k141_215910_13
Type: CAZyme
Location: 13225 - 14391 (+)
Type: CAZyme
Location: 13225 - 14391 (+)
Gene ID: k141_215910_14
Type: CAZyme
Location: 14441 - 15682 (+)
Type: CAZyme
Location: 14441 - 15682 (+)
Gene ID: k141_215910_15
Type: CAZyme
Location: 15706 - 18174 (+)
Type: CAZyme
Location: 15706 - 18174 (+)
Gene ID: k141_215910_16
Type: TF
Location: 18238 - 22350 (+)
Type: TF
Location: 18238 - 22350 (+)
Gene ID: k141_215910_17
Type: TC
Location: 22511 - 25648 (+)
Type: TC
Location: 22511 - 25648 (+)
Gene ID: k141_215910_18
Type: pfam
Location: 25673 - 27148 (+)
Type: pfam
Location: 25673 - 27148 (+)
Gene ID: k141_215910_19
Type: TC
Location: 27233 - 31222 (+)
Type: TC
Location: 27233 - 31222 (+)
Gene ID: k141_215910_20
Type: CAZyme
Location: 31230 - 32783 (+)
Type: CAZyme
Location: 31230 - 32783 (+)
Gene ID: k141_215910_21
Type: STP
Location: 32994 - 33872 (+)
Type: STP
Location: 32994 - 33872 (+)
Gene ID: k141_215910_22
Type: TC
Location: 34001 - 37375 (+)
Type: TC
Location: 34001 - 37375 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Tannerellaceae
Genus
Parabacteroides
Species
Parabacteroides faecis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| k141_215910_10 | vegetarian > omnivore | 2.51162 | 0.01970 |
| k141_215910_10 | vegetarian > vegan | 1.45918 | 0.03621 |