Cluster: CGMR067258_CGC29
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 4
- Substrate:
- Genome ID: CGMR067258
- CGC Family ID: CGCFAM_01173
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | k141_47618 | k141_47618_9 | 7634 | 9397 | - | GH123 |
| pfam | k141_47618 | k141_47618_10 | 9636 | 10706 | - | Radical_SAM | SPASM |
| NULL(UNKNOWN) | k141_47618 | k141_47618_11 | 10725 | 11543 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | k141_47618 | k141_47618_12 | 11657 | 13504 | + | 3.A.1.135.5 |
| CAZyme | k141_47618 | k141_47618_13 | 13542 | 16007 | + | GH95 |
| pfam | k141_47618 | k141_47618_14 | 16004 | 17101 | - | Porin_O_P | Porin_O_P |
| pfam | k141_47618 | k141_47618_15 | 17295 | 17969 | - | PhoU | PhoU |
| TC | k141_47618 | k141_47618_16 | 17990 | 18742 | - | 3.A.1.7.1 |
| TC | k141_47618 | k141_47618_17 | 18770 | 19657 | - | 3.A.1.7.2 |
| TC | k141_47618 | k141_47618_18 | 19665 | 20852 | - | 3.A.1.7.5 |
| CAZyme | k141_47618 | k141_47618_19 | 21097 | 22299 | + | GH88 |
| CAZyme | k141_47618 | k141_47618_20 | 22306 | 23526 | + | GH154 |
Gene ID: k141_47618_9
Type: CAZyme
Location: 7634 - 9397 (-)
Type: CAZyme
Location: 7634 - 9397 (-)
Gene ID: k141_47618_10
Type: pfam
Location: 9636 - 10706 (-)
Type: pfam
Location: 9636 - 10706 (-)
Gene ID: k141_47618_11
Type:
Location: 10725 - 11543 (-)
Type:
Location: 10725 - 11543 (-)
Gene ID: k141_47618_12
Type: TC
Location: 11657 - 13504 (+)
Type: TC
Location: 11657 - 13504 (+)
Gene ID: k141_47618_13
Type: CAZyme
Location: 13542 - 16007 (+)
Type: CAZyme
Location: 13542 - 16007 (+)
Gene ID: k141_47618_14
Type: pfam
Location: 16004 - 17101 (-)
Type: pfam
Location: 16004 - 17101 (-)
Gene ID: k141_47618_15
Type: pfam
Location: 17295 - 17969 (-)
Type: pfam
Location: 17295 - 17969 (-)
Gene ID: k141_47618_16
Type: TC
Location: 17990 - 18742 (-)
Type: TC
Location: 17990 - 18742 (-)
Gene ID: k141_47618_17
Type: TC
Location: 18770 - 19657 (-)
Type: TC
Location: 18770 - 19657 (-)
Gene ID: k141_47618_18
Type: TC
Location: 19665 - 20852 (-)
Type: TC
Location: 19665 - 20852 (-)
Gene ID: k141_47618_19
Type: CAZyme
Location: 21097 - 22299 (+)
Type: CAZyme
Location: 21097 - 22299 (+)
Gene ID: k141_47618_20
Type: CAZyme
Location: 22306 - 23526 (+)
Type: CAZyme
Location: 22306 - 23526 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Tannerellaceae
Genus
Parabacteroides
Species
Parabacteroides faecis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| k141_47618_18 | vegetarian > omnivore | 1.81672 | 0.01970 |
| k141_47618_18 | vegetarian > vegan | 1.63263 | 0.03621 |
| k141_47618_20 | vegetarian > omnivore | 1.34644 | 0.01415 |