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Cluster: CGMR067258_CGC111

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC k141_278605 k141_278605_40 45083 48535 + 1.B.14.6.1
pfam k141_278605 k141_278605_41 48548 50578 + SusD_RagB | SusD-like_3
CAZyme k141_278605 k141_278605_42 50744 53548 + GH2
CAZyme k141_278605 k141_278605_43 53582 55294 + GH29
NULL(UNKNOWN) k141_278605 k141_278605_44 55299 57722 + NULL(UNKNOWN)
[View Structural Homologs]
TF k141_278605 k141_278605_45 57783 58706 - HTH_AraC | HTH_AraC
TC k141_278605 k141_278605_46 58871 62197 + 9.A.25.1.1
Gene ID: k141_278605_40
Type: TC
Location: 45083 - 48535 (+)
Gene ID: k141_278605_41
Type: pfam
Location: 48548 - 50578 (+)
Gene ID: k141_278605_42
Type: CAZyme
Location: 50744 - 53548 (+)
Gene ID: k141_278605_43
Type: CAZyme
Location: 53582 - 55294 (+)
Gene ID: k141_278605_44
Type:
Location: 55299 - 57722 (+)
Gene ID: k141_278605_45
Type: TF
Location: 57783 - 58706 (-)
Gene ID: k141_278605_46
Type: TC
Location: 58871 - 62197 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
k141_278605_46 vegetarian > omnivore 2.08476 0.01970
k141_278605_46 vegetarian > vegan 1.58414 0.03621

🧭 Explore Read Mapping of CGC

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