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Cluster: CGMR067258_CGC10

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC k141_221850 k141_221850_28 41813 42655 + 1.A.23.2.1
pfam k141_221850 k141_221850_29 42894 45107 - TGS | RelA_SpoT | ACT_4 | HD_4 | RelA_AH_RIS
pfam k141_221850 k141_221850_30 45284 46804 + DUF4301
CAZyme k141_221850 k141_221850_31 46881 48194 - GH177
pfam k141_221850 k141_221850_32 48386 49480 + PCMD
pfam k141_221850 k141_221850_33 49492 50277 + OMP_b-brl_2
CAZyme k141_221850 k141_221850_34 50400 51749 + GH109
TF k141_221850 k141_221850_35 52244 56194 - HTH_AraC
TC k141_221850 k141_221850_36 56462 59659 + 1.B.14.6.2
Gene ID: k141_221850_28
Type: TC
Location: 41813 - 42655 (+)
Gene ID: k141_221850_29
Type: pfam
Location: 42894 - 45107 (-)
Gene ID: k141_221850_30
Type: pfam
Location: 45284 - 46804 (+)
Gene ID: k141_221850_31
Type: CAZyme
Location: 46881 - 48194 (-)
Gene ID: k141_221850_32
Type: pfam
Location: 48386 - 49480 (+)
Gene ID: k141_221850_33
Type: pfam
Location: 49492 - 50277 (+)
Gene ID: k141_221850_34
Type: CAZyme
Location: 50400 - 51749 (+)
Gene ID: k141_221850_35
Type: TF
Location: 52244 - 56194 (-)
Gene ID: k141_221850_36
Type: TC
Location: 56462 - 59659 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
k141_221850_28 vegetarian > omnivore 2.07258 0.01970
k141_221850_28 vegetarian > vegan 1.97940 0.02615

🧭 Explore Read Mapping of CGC

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