Cluster: CGMR066400_CGC19
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate:
- Genome ID: CGMR066400
- CGC Family ID: CGCFAM_01177
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | k141_618758 | k141_618758_59 | 57778 | 59295 | - | 2.A.17.1.7 |
| CAZyme | k141_618758 | k141_618758_60 | 59441 | 61477 | + | GH13_8 |
| CAZyme | k141_618758 | k141_618758_61 | 61526 | 62755 | - | GT30 |
| pfam | k141_618758 | k141_618758_62 | 62810 | 63229 | - | UPF0102 |
| peptidase | k141_618758 | k141_618758_63 | 63320 | 64021 | - | S51.001 |
| TC | k141_618758 | k141_618758_64 | 64190 | 64426 | + | 3.D.1.6.4 |
Gene ID: k141_618758_59
Type: TC
Location: 57778 - 59295 (-)
Type: TC
Location: 57778 - 59295 (-)
Gene ID: k141_618758_60
Type: CAZyme
Location: 59441 - 61477 (+)
Type: CAZyme
Location: 59441 - 61477 (+)
Gene ID: k141_618758_61
Type: CAZyme
Location: 61526 - 62755 (-)
Type: CAZyme
Location: 61526 - 62755 (-)
Gene ID: k141_618758_62
Type: pfam
Location: 62810 - 63229 (-)
Type: pfam
Location: 62810 - 63229 (-)
Gene ID: k141_618758_63
Type: peptidase
Location: 63320 - 64021 (-)
Type: peptidase
Location: 63320 - 64021 (-)
Gene ID: k141_618758_64
Type: TC
Location: 64190 - 64426 (+)
Type: TC
Location: 64190 - 64426 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes
Species
Alistipes sp017384185
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| k141_618758_64 | omnivore > vegan | 1.58067 | 0.00707 |
| k141_618758_64 | vegetarian > vegan | 1.16220 | 0.02258 |