Cluster: CGMR066400_CGC17
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 3
- Substrate:
- Genome ID: CGMR066400
- CGC Family ID: CGCFAM_00607
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | k141_229915 | k141_229915_9 | 6416 | 9658 | + | GH106 |
| pfam | k141_229915 | k141_229915_10 | 9704 | 11197 | - | GD_AH_second | SAF | GD_AH_C |
| pfam | k141_229915 | k141_229915_11 | 11209 | 12657 | - | Mannitol_dh | Mannitol_dh_C |
| CAZyme | k141_229915 | k141_229915_12 | 12657 | 15566 | - | GH2 |
| STP | k141_229915 | k141_229915_13 | 16106 | 16624 | + | Sigma70_r2 | Sigma70_r4 |
| pfam | k141_229915 | k141_229915_14 | 16643 | 17206 | + | TonB_C |
| TC | k141_229915 | k141_229915_15 | 17282 | 19186 | - | 4.C.1.1.14 |
| sulfatase | k141_229915 | k141_229915_16 | 19248 | 21038 | - | S1_97 |
| pfam | k141_229915 | k141_229915_17 | 21232 | 22113 | + | UbiA |
| TC | k141_229915 | k141_229915_18 | 22122 | 23018 | + | 2.A.7.3.57 |
| pfam | k141_229915 | k141_229915_19 | 23078 | 25543 | + | tRNA_bind | FDX-ACB | B3_4 | B5 | tRNA_synthFbeta |
| NULL(UNKNOWN) | k141_229915 | k141_229915_20 | 25622 | 26734 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | k141_229915 | k141_229915_21 | 26738 | 28903 | - | GH20 |
Gene ID: k141_229915_9
Type: CAZyme
Location: 6416 - 9658 (+)
Type: CAZyme
Location: 6416 - 9658 (+)
Gene ID: k141_229915_10
Type: pfam
Location: 9704 - 11197 (-)
Type: pfam
Location: 9704 - 11197 (-)
Gene ID: k141_229915_11
Type: pfam
Location: 11209 - 12657 (-)
Type: pfam
Location: 11209 - 12657 (-)
Gene ID: k141_229915_12
Type: CAZyme
Location: 12657 - 15566 (-)
Type: CAZyme
Location: 12657 - 15566 (-)
Gene ID: k141_229915_13
Type: STP
Location: 16106 - 16624 (+)
Type: STP
Location: 16106 - 16624 (+)
Gene ID: k141_229915_14
Type: pfam
Location: 16643 - 17206 (+)
Type: pfam
Location: 16643 - 17206 (+)
Gene ID: k141_229915_15
Type: TC
Location: 17282 - 19186 (-)
Type: TC
Location: 17282 - 19186 (-)
Gene ID: k141_229915_16
Type: sulfatase
Location: 19248 - 21038 (-)
Type: sulfatase
Location: 19248 - 21038 (-)
Gene ID: k141_229915_17
Type: pfam
Location: 21232 - 22113 (+)
Type: pfam
Location: 21232 - 22113 (+)
Gene ID: k141_229915_18
Type: TC
Location: 22122 - 23018 (+)
Type: TC
Location: 22122 - 23018 (+)
Gene ID: k141_229915_19
Type: pfam
Location: 23078 - 25543 (+)
Type: pfam
Location: 23078 - 25543 (+)
Gene ID: k141_229915_20
Type:
Location: 25622 - 26734 (-)
Type:
Location: 25622 - 26734 (-)
Gene ID: k141_229915_21
Type: CAZyme
Location: 26738 - 28903 (-)
Type: CAZyme
Location: 26738 - 28903 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes
Species
Alistipes sp017384185
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.