Cluster: CGMR066211_CGC13
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 4
- Substrate:
- Genome ID: CGMR066211
- CGC Family ID: CGCFAM_02078
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | k141_83135 | k141_83135_35 | 32769 | 34244 | - | 1.I.1.1.3 |
| TC | k141_83135 | k141_83135_36 | 34376 | 35038 | - | 9.B.28.3.1 |
| TC | k141_83135 | k141_83135_37 | 35043 | 35912 | - | 3.A.1.1.36 |
| TC | k141_83135 | k141_83135_38 | 35925 | 36827 | - | 3.A.1.1.11 |
| STP | k141_83135 | k141_83135_39 | 36915 | 38198 | - | SBP_bac_1 |
| CAZyme | k141_83135 | k141_83135_40 | 38242 | 39384 | - | GH88 |
| NULL(UNKNOWN) | k141_83135 | k141_83135_41 | 39410 | 39793 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TF | k141_83135 | k141_83135_42 | 40008 | 41066 | + | LacI |
| CAZyme | k141_83135 | k141_83135_43 | 41129 | 42811 | - | PL33_2 |
| CAZyme | k141_83135 | k141_83135_44 | 42827 | 44608 | - | GH154 |
| pfam | k141_83135 | k141_83135_45 | 44743 | 47148 | - | Big_4 | Big_4 | FIVAR | FIVAR | FIVAR | FIVAR | FIVAR | FIVAR |
| CAZyme | k141_83135 | k141_83135_46 | 47114 | 50149 | - | GH136 |
Gene ID: k141_83135_35
Type: TC
Location: 32769 - 34244 (-)
Type: TC
Location: 32769 - 34244 (-)
Gene ID: k141_83135_36
Type: TC
Location: 34376 - 35038 (-)
Type: TC
Location: 34376 - 35038 (-)
Gene ID: k141_83135_37
Type: TC
Location: 35043 - 35912 (-)
Type: TC
Location: 35043 - 35912 (-)
Gene ID: k141_83135_38
Type: TC
Location: 35925 - 36827 (-)
Type: TC
Location: 35925 - 36827 (-)
Gene ID: k141_83135_39
Type: STP
Location: 36915 - 38198 (-)
Type: STP
Location: 36915 - 38198 (-)
Gene ID: k141_83135_40
Type: CAZyme
Location: 38242 - 39384 (-)
Type: CAZyme
Location: 38242 - 39384 (-)
Gene ID: k141_83135_41
Type:
Location: 39410 - 39793 (-)
Type:
Location: 39410 - 39793 (-)
Gene ID: k141_83135_42
Type: TF
Location: 40008 - 41066 (+)
Type: TF
Location: 40008 - 41066 (+)
Gene ID: k141_83135_43
Type: CAZyme
Location: 41129 - 42811 (-)
Type: CAZyme
Location: 41129 - 42811 (-)
Gene ID: k141_83135_44
Type: CAZyme
Location: 42827 - 44608 (-)
Type: CAZyme
Location: 42827 - 44608 (-)
Gene ID: k141_83135_45
Type: pfam
Location: 44743 - 47148 (-)
Type: pfam
Location: 44743 - 47148 (-)
Gene ID: k141_83135_46
Type: CAZyme
Location: 47114 - 50149 (-)
Type: CAZyme
Location: 47114 - 50149 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Vagococcaceae
Genus
Vagococcus
Species
Vagococcus silagei
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.