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Cluster: CGMR066211_CGC10

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC k141_178989 k141_178989_2 463 1233 + 3.A.1.17.13
TC k141_178989 k141_178989_3 1242 2243 + 3.A.1.17.8
TC k141_178989 k141_178989_4 2240 2983 + 3.A.1.17.8
TC k141_178989 k141_178989_5 3558 5081 + 2.A.118.1.7
pfam k141_178989 k141_178989_6 5147 5743 - TetR_C_19
TC k141_178989 k141_178989_7 5815 6507 - 3.A.1.122.4
pfam k141_178989 k141_178989_8 6512 7588 - FtsX
pfam k141_178989 k141_178989_9 7905 8753 + PRD | PRD | CAT_RBD
TC k141_178989 k141_178989_10 8759 10597 + 4.A.1.2.11
CAZyme k141_178989 k141_178989_11 10625 12055 + GH1
Gene ID: k141_178989_2
Type: TC
Location: 463 - 1233 (+)
Gene ID: k141_178989_3
Type: TC
Location: 1242 - 2243 (+)
Gene ID: k141_178989_4
Type: TC
Location: 2240 - 2983 (+)
Gene ID: k141_178989_5
Type: TC
Location: 3558 - 5081 (+)
Gene ID: k141_178989_6
Type: pfam
Location: 5147 - 5743 (-)
Gene ID: k141_178989_7
Type: TC
Location: 5815 - 6507 (-)
Gene ID: k141_178989_8
Type: pfam
Location: 6512 - 7588 (-)
Gene ID: k141_178989_9
Type: pfam
Location: 7905 - 8753 (+)
Gene ID: k141_178989_10
Type: TC
Location: 8759 - 10597 (+)
Gene ID: k141_178989_11
Type: CAZyme
Location: 10625 - 12055 (+)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacillota
→
Class
Bacilli
→
Order
Lactobacillales
→
Family
Vagococcaceae
→
Genus
Vagococcus
→
Species
Vagococcus silagei

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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