Cluster: CGMR065855_CGC23
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: CGMR065855
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | k141_96387 | k141_96387_7 | 5469 | 7019 | + | AA4 |
| TF | k141_96387 | k141_96387_8 | 7273 | 8253 | - | HTH_AraC |
| pfam | k141_96387 | k141_96387_9 | 8468 | 9691 | + | ANF_receptor | Peripla_BP_5 | Peripla_BP_5 | Peripla_BP_6 |
| TC | k141_96387 | k141_96387_10 | 9933 | 10808 | + | 3.A.1.4.3 |
| TC | k141_96387 | k141_96387_11 | 10805 | 11746 | + | 3.A.1.4.11 |
| TC | k141_96387 | k141_96387_12 | 11743 | 12513 | + | 3.A.1.4.1 |
| TC | k141_96387 | k141_96387_13 | 12506 | 13219 | + | 3.A.1.4.10 |
Gene ID: k141_96387_7
Type: CAZyme
Location: 5469 - 7019 (+)
Type: CAZyme
Location: 5469 - 7019 (+)
Gene ID: k141_96387_8
Type: TF
Location: 7273 - 8253 (-)
Type: TF
Location: 7273 - 8253 (-)
Gene ID: k141_96387_9
Type: pfam
Location: 8468 - 9691 (+)
Type: pfam
Location: 8468 - 9691 (+)
Gene ID: k141_96387_10
Type: TC
Location: 9933 - 10808 (+)
Type: TC
Location: 9933 - 10808 (+)
Gene ID: k141_96387_11
Type: TC
Location: 10805 - 11746 (+)
Type: TC
Location: 10805 - 11746 (+)
Gene ID: k141_96387_12
Type: TC
Location: 11743 - 12513 (+)
Type: TC
Location: 11743 - 12513 (+)
Gene ID: k141_96387_13
Type: TC
Location: 12506 - 13219 (+)
Type: TC
Location: 12506 - 13219 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Burkholderiales
Family
Burkholderiaceae
Genus
Comamonas
Species
Comamonas thiooxydans
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.