Cluster: CGMR065684_CGC8
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: CGMR065684
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | k141_11183 | k141_11183_14 | 18207 | 18695 | + | 4.A.6.1.9 |
| TC | k141_11183 | k141_11183_15 | 18767 | 19624 | + | 4.A.6.1.1 |
| TC | k141_11183 | k141_11183_16 | 19624 | 20451 | + | 4.A.6.1.6 |
| NULL(UNKNOWN) | k141_11183 | k141_11183_17 | 20647 | 20973 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TF | k141_11183 | k141_11183_18 | 21078 | 21518 | + | MarR |
| CAZyme | k141_11183 | k141_11183_19 | 22033 | 28446 | + | GH31_18 |
Gene ID: k141_11183_14
Type: TC
Location: 18207 - 18695 (+)
Type: TC
Location: 18207 - 18695 (+)
Gene ID: k141_11183_15
Type: TC
Location: 18767 - 19624 (+)
Type: TC
Location: 18767 - 19624 (+)
Gene ID: k141_11183_16
Type: TC
Location: 19624 - 20451 (+)
Type: TC
Location: 19624 - 20451 (+)
Gene ID: k141_11183_17
Type:
Location: 20647 - 20973 (+)
Type:
Location: 20647 - 20973 (+)
Gene ID: k141_11183_18
Type: TF
Location: 21078 - 21518 (+)
Type: TF
Location: 21078 - 21518 (+)
Gene ID: k141_11183_19
Type: CAZyme
Location: 22033 - 28446 (+)
Type: CAZyme
Location: 22033 - 28446 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp905215385
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| k141_11183_19 | vegetarian > omnivore | 1.40353 | 0.03126 |
| k141_11183_19 | vegetarian > vegan | 2.07699 | 0.01195 |