Cluster: CGMR065684_CGC3
🧬 Cluster Details
- Gene Count: 9
- CAZyme Count: 2
- Substrate:
- Genome ID: CGMR065684
- CGC Family ID: CGCFAM_01141
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | k141_98153 | k141_98153_108 | 109443 | 110819 | - | GH13_20 |
| TC | k141_98153 | k141_98153_109 | 110973 | 112169 | - | 2.A.1.2.18 |
| NULL(UNKNOWN) | k141_98153 | k141_98153_110 | 112345 | 113097 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | k141_98153 | k141_98153_111 | 113263 | 114636 | - | GH4 |
| TF | k141_98153 | k141_98153_112 | 114812 | 115564 | + | HTH_6 |
| TC | k141_98153 | k141_98153_113 | 115627 | 117291 | - | 4.A.1.1.3 |
| TC | k141_98153 | k141_98153_114 | 117606 | 119966 | - | 9.A.8.1.6 |
| NULL(UNKNOWN) | k141_98153 | k141_98153_115 | 120088 | 120408 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | k141_98153 | k141_98153_116 | 120870 | 122333 | - | 2.A.3.2.3 |
Gene ID: k141_98153_108
Type: CAZyme
Location: 109443 - 110819 (-)
Type: CAZyme
Location: 109443 - 110819 (-)
Gene ID: k141_98153_109
Type: TC
Location: 110973 - 112169 (-)
Type: TC
Location: 110973 - 112169 (-)
Gene ID: k141_98153_110
Type:
Location: 112345 - 113097 (-)
Type:
Location: 112345 - 113097 (-)
Gene ID: k141_98153_111
Type: CAZyme
Location: 113263 - 114636 (-)
Type: CAZyme
Location: 113263 - 114636 (-)
Gene ID: k141_98153_112
Type: TF
Location: 114812 - 115564 (+)
Type: TF
Location: 114812 - 115564 (+)
Gene ID: k141_98153_113
Type: TC
Location: 115627 - 117291 (-)
Type: TC
Location: 115627 - 117291 (-)
Gene ID: k141_98153_114
Type: TC
Location: 117606 - 119966 (-)
Type: TC
Location: 117606 - 119966 (-)
Gene ID: k141_98153_115
Type:
Location: 120088 - 120408 (-)
Type:
Location: 120088 - 120408 (-)
Gene ID: k141_98153_116
Type: TC
Location: 120870 - 122333 (-)
Type: TC
Location: 120870 - 122333 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp905215385
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| k141_98153_110 | vegan > omnivore | 2.04443 | 0.00701 |
| k141_98153_111 | vegan > omnivore | 1.84676 | 0.00701 |
| k141_98153_113 | vegan > omnivore | 1.24741 | 0.00701 |
| k141_98153_116 | vegan > omnivore | 1.45147 | 0.00701 |