Cluster: CGMR065684_CGC14
🧬 Cluster Details
- Gene Count: 9
- CAZyme Count: 4
- Substrate:
- Genome ID: CGMR065684
- CGC Family ID: CGCFAM_00011
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | k141_98593 | k141_98593_1 | 170 | 862 | - | 3.A.1.103.5 |
| CAZyme | k141_98593 | k141_98593_2 | 985 | 1947 | + | GT81 |
| NULL(UNKNOWN) | k141_98593 | k141_98593_3 | 2140 | 2229 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| NULL(UNKNOWN) | k141_98593 | k141_98593_4 | 2296 | 3336 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | k141_98593 | k141_98593_5 | 3789 | 5024 | - | GT4 |
| CAZyme | k141_98593 | k141_98593_6 | 5046 | 6107 | - | GT2 |
| CAZyme | k141_98593 | k141_98593_7 | 6147 | 7403 | - | GT2 |
| TC | k141_98593 | k141_98593_8 | 7405 | 8160 | - | 3.A.1.103.1 |
| TC | k141_98593 | k141_98593_9 | 8170 | 8982 | - | 3.A.1.103.4 |
Gene ID: k141_98593_1
Type: TC
Location: 170 - 862 (-)
Type: TC
Location: 170 - 862 (-)
Gene ID: k141_98593_2
Type: CAZyme
Location: 985 - 1947 (+)
Type: CAZyme
Location: 985 - 1947 (+)
Gene ID: k141_98593_3
Type:
Location: 2140 - 2229 (+)
Type:
Location: 2140 - 2229 (+)
Gene ID: k141_98593_4
Type:
Location: 2296 - 3336 (+)
Type:
Location: 2296 - 3336 (+)
Gene ID: k141_98593_5
Type: CAZyme
Location: 3789 - 5024 (-)
Type: CAZyme
Location: 3789 - 5024 (-)
Gene ID: k141_98593_6
Type: CAZyme
Location: 5046 - 6107 (-)
Type: CAZyme
Location: 5046 - 6107 (-)
Gene ID: k141_98593_7
Type: CAZyme
Location: 6147 - 7403 (-)
Type: CAZyme
Location: 6147 - 7403 (-)
Gene ID: k141_98593_8
Type: TC
Location: 7405 - 8160 (-)
Type: TC
Location: 7405 - 8160 (-)
Gene ID: k141_98593_9
Type: TC
Location: 8170 - 8982 (-)
Type: TC
Location: 8170 - 8982 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp905215385
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| k141_98593_5 | vegetarian > omnivore | 1.96348 | 0.03126 |
| k141_98593_5 | vegetarian > vegan | 3.85487 | 0.01712 |
| k141_98593_6 | vegetarian > omnivore | 2.24520 | 0.03126 |
| k141_98593_6 | vegetarian > vegan | 5.61331 | 0.01712 |
| k141_98593_8 | vegetarian > vegan | 1.23000 | 0.01712 |
| k141_98593_9 | vegetarian > vegan | 1.40166 | 0.04125 |