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Cluster: CGMR065185_CGC14

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC k141_18358 k141_18358_2 1878 2624 + 1.A.8.2.6
pfam k141_18358 k141_18358_3 2707 3405 + Phage_lysozyme
NULL(UNKNOWN) k141_18358 k141_18358_4 3457 4308 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme k141_18358 k141_18358_5 4777 7773 - GH43_34 | GH97
STP k141_18358 k141_18358_6 7780 8811 - FecR
STP k141_18358 k141_18358_7 8808 9392 - Sigma70_r2 | Sigma70_r4_2
TC k141_18358 k141_18358_8 9819 13103 + 1.B.14.6.1
pfam k141_18358 k141_18358_9 13123 14853 + SusD_RagB | SusD-like_3
pfam k141_18358 k141_18358_10 14886 16400 + SusF_SusE | SusF_SusE
CAZyme k141_18358 k141_18358_11 16482 17891 + GH27
pfam k141_18358 k141_18358_12 17905 18813 + SusF_SusE
CAZyme k141_18358 k141_18358_13 18820 21030 + GH3
CAZyme k141_18358 k141_18358_14 21023 22948 + CE20 | CE20
Gene ID: k141_18358_2
Type: TC
Location: 1878 - 2624 (+)
Gene ID: k141_18358_3
Type: pfam
Location: 2707 - 3405 (+)
Gene ID: k141_18358_4
Type:
Location: 3457 - 4308 (+)
Gene ID: k141_18358_5
Type: CAZyme
Location: 4777 - 7773 (-)
Gene ID: k141_18358_6
Type: STP
Location: 7780 - 8811 (-)
Gene ID: k141_18358_7
Type: STP
Location: 8808 - 9392 (-)
Gene ID: k141_18358_8
Type: TC
Location: 9819 - 13103 (+)
Gene ID: k141_18358_9
Type: pfam
Location: 13123 - 14853 (+)
Gene ID: k141_18358_10
Type: pfam
Location: 14886 - 16400 (+)
Gene ID: k141_18358_11
Type: CAZyme
Location: 16482 - 17891 (+)
Gene ID: k141_18358_12
Type: pfam
Location: 17905 - 18813 (+)
Gene ID: k141_18358_13
Type: CAZyme
Location: 18820 - 21030 (+)
Gene ID: k141_18358_14
Type: CAZyme
Location: 21023 - 22948 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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