Cluster: CGMR065062_CGC3
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: CGMR065062
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | k141_197337 | k141_197337_5 | 2796 | 3800 | - | 1.A.35.4.1 |
| pfam | k141_197337 | k141_197337_6 | 3814 | 4299 | - | RraA-like |
| STP | k141_197337 | k141_197337_7 | 4442 | 5410 | - | Sigma70_r2 | Sigma70_r3 | Sigma70_r4 |
| CAZyme | k141_197337 | k141_197337_8 | 5508 | 6356 | - | CBM50 |
Gene ID: k141_197337_5
Type: TC
Location: 2796 - 3800 (-)
Type: TC
Location: 2796 - 3800 (-)
Gene ID: k141_197337_6
Type: pfam
Location: 3814 - 4299 (-)
Type: pfam
Location: 3814 - 4299 (-)
Gene ID: k141_197337_7
Type: STP
Location: 4442 - 5410 (-)
Type: STP
Location: 4442 - 5410 (-)
Gene ID: k141_197337_8
Type: CAZyme
Location: 5508 - 6356 (-)
Type: CAZyme
Location: 5508 - 6356 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Thiopseudomonas
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.