Cluster: CGMR065062_CGC15
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: CGMR065062
- CGC Family ID: CGCFAM_00018
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | k141_185924 | k141_185924_2 | 1152 | 2189 | + | 9.B.18.2.1 |
| pfam | k141_185924 | k141_185924_3 | 2193 | 3311 | + | Epimerase | Polysacc_synt_2 | NAD_binding_4 | Polysacc_synt_C |
| pfam | k141_185924 | k141_185924_4 | 3339 | 4475 | + | Epimerase_2 |
| CAZyme | k141_185924 | k141_185924_5 | 4475 | 5635 | + | GT4 |
Gene ID: k141_185924_2
Type: TC
Location: 1152 - 2189 (+)
Type: TC
Location: 1152 - 2189 (+)
Gene ID: k141_185924_3
Type: pfam
Location: 2193 - 3311 (+)
Type: pfam
Location: 2193 - 3311 (+)
Gene ID: k141_185924_4
Type: pfam
Location: 3339 - 4475 (+)
Type: pfam
Location: 3339 - 4475 (+)
Gene ID: k141_185924_5
Type: CAZyme
Location: 4475 - 5635 (+)
Type: CAZyme
Location: 4475 - 5635 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Thiopseudomonas
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.