Cluster: CGMR064757_CGC8
🧬 Cluster Details
- Gene Count: 18
- CAZyme Count: 8
- Substrate: beta-mannan/xylan/beta-glucan
- Genome ID: CGMR064757
- CGC Family ID: CGCFAM_00044
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | k141_49887 | k141_49887_28 | 35119 | 36483 | + | 2.A.22.5.3 |
| pfam | k141_49887 | k141_49887_29 | 36489 | 37394 | + | HHH_3 | HHH_3 | HHH_3 |
| pfam | k141_49887 | k141_49887_30 | 37481 | 38887 | - | Alk_phosphatase | Alk_phosphatase |
| CAZyme | k141_49887 | k141_49887_31 | 39031 | 40035 | - | CBM91 | GH43_12 |
| pfam | k141_49887 | k141_49887_32 | 40333 | 40764 | - | Glyco_hydro_43 |
| TF | k141_49887 | k141_49887_33 | 40851 | 44969 | - | HTH_AraC |
| TC | k141_49887 | k141_49887_34 | 45583 | 48735 | + | 1.B.14.6.1 |
| pfam | k141_49887 | k141_49887_35 | 48751 | 50469 | + | SusD_RagB | SusD-like_3 |
| pfam | k141_49887 | k141_49887_36 | 50486 | 51904 | + | SGBP_B_XBD |
| CAZyme | k141_49887 | k141_49887_37 | 51932 | 54256 | + | GH10 |
| CAZyme | k141_49887 | k141_49887_38 | 54445 | 56157 | + | GH35 |
| CAZyme | k141_49887 | k141_49887_39 | 56227 | 57870 | + | CE20 | CE20 |
| TC | k141_49887 | k141_49887_40 | 57909 | 59330 | + | 2.A.2.3.2 |
| CAZyme | k141_49887 | k141_49887_41 | 59436 | 60566 | + | GH10 |
| CAZyme | k141_49887 | k141_49887_42 | 60607 | 61578 | + | GH43_1 |
| CAZyme | k141_49887 | k141_49887_43 | 61602 | 63725 | + | GH67 |
| pfam | k141_49887 | k141_49887_44 | 63771 | 64946 | - | Amidase_3 |
| CAZyme | k141_49887 | k141_49887_45 | 65253 | 67586 | + | GH115 |
Gene ID: k141_49887_28
Type: TC
Location: 35119 - 36483 (+)
Type: TC
Location: 35119 - 36483 (+)
Gene ID: k141_49887_29
Type: pfam
Location: 36489 - 37394 (+)
Type: pfam
Location: 36489 - 37394 (+)
Gene ID: k141_49887_30
Type: pfam
Location: 37481 - 38887 (-)
Type: pfam
Location: 37481 - 38887 (-)
Gene ID: k141_49887_31
Type: CAZyme
Location: 39031 - 40035 (-)
Type: CAZyme
Location: 39031 - 40035 (-)
Gene ID: k141_49887_32
Type: pfam
Location: 40333 - 40764 (-)
Type: pfam
Location: 40333 - 40764 (-)
Gene ID: k141_49887_33
Type: TF
Location: 40851 - 44969 (-)
Type: TF
Location: 40851 - 44969 (-)
Gene ID: k141_49887_34
Type: TC
Location: 45583 - 48735 (+)
Type: TC
Location: 45583 - 48735 (+)
Gene ID: k141_49887_35
Type: pfam
Location: 48751 - 50469 (+)
Type: pfam
Location: 48751 - 50469 (+)
Gene ID: k141_49887_36
Type: pfam
Location: 50486 - 51904 (+)
Type: pfam
Location: 50486 - 51904 (+)
Gene ID: k141_49887_37
Type: CAZyme
Location: 51932 - 54256 (+)
Type: CAZyme
Location: 51932 - 54256 (+)
Gene ID: k141_49887_38
Type: CAZyme
Location: 54445 - 56157 (+)
Type: CAZyme
Location: 54445 - 56157 (+)
Gene ID: k141_49887_39
Type: CAZyme
Location: 56227 - 57870 (+)
Type: CAZyme
Location: 56227 - 57870 (+)
Gene ID: k141_49887_40
Type: TC
Location: 57909 - 59330 (+)
Type: TC
Location: 57909 - 59330 (+)
Gene ID: k141_49887_41
Type: CAZyme
Location: 59436 - 60566 (+)
Type: CAZyme
Location: 59436 - 60566 (+)
Gene ID: k141_49887_42
Type: CAZyme
Location: 60607 - 61578 (+)
Type: CAZyme
Location: 60607 - 61578 (+)
Gene ID: k141_49887_43
Type: CAZyme
Location: 61602 - 63725 (+)
Type: CAZyme
Location: 61602 - 63725 (+)
Gene ID: k141_49887_44
Type: pfam
Location: 63771 - 64946 (-)
Type: pfam
Location: 63771 - 64946 (-)
Gene ID: k141_49887_45
Type: CAZyme
Location: 65253 - 67586 (+)
Type: CAZyme
Location: 65253 - 67586 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola_A
Species
Phocaeicola_A sp900765575
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.