Cluster: CGMR063819_CGC9
🧬 Cluster Details
- Gene Count: 18
- CAZyme Count: 6
- Substrate:
- Genome ID: CGMR063819
- CGC Family ID: CGCFAM_00123
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | k141_6498 | k141_6498_59 | 59131 | 60447 | + | 2.A.8.1.4 |
| CAZyme | k141_6498 | k141_6498_60 | 60493 | 62580 | - | GH77 |
| CAZyme | k141_6498 | k141_6498_61 | 62590 | 64983 | - | GT35 |
| TF | k141_6498 | k141_6498_62 | 65611 | 68316 | + | GerE |
| TF | k141_6498 | k141_6498_63 | 68358 | 69116 | - | HTH_DeoR |
| TC | k141_6498 | k141_6498_64 | 69132 | 69962 | - | 9.B.104.1.1 |
| STP | k141_6498 | k141_6498_65 | 70038 | 70364 | - | Rhodanese |
| pfam | k141_6498 | k141_6498_66 | 70562 | 72070 | + | DAO | DAO_C |
| CAZyme | k141_6498 | k141_6498_67 | 72161 | 74608 | - | GT35 |
| CAZyme | k141_6498 | k141_6498_68 | 74628 | 76061 | - | GT5 |
| pfam | k141_6498 | k141_6498_69 | 76061 | 77356 | - | NTP_transferase | NTP_transf_3 | Hexapep_GlmU |
| CAZyme | k141_6498 | k141_6498_70 | 77370 | 79346 | - | CBM48 | GH13_11 |
| CAZyme | k141_6498 | k141_6498_71 | 79343 | 81529 | - | CBM48 | GH13_9 |
| pfam | k141_6498 | k141_6498_72 | 81803 | 82909 | - | Semialdhyde_dh | Semialdhyde_dhC |
| NULL(UNKNOWN) | k141_6498 | k141_6498_73 | 83070 | 83231 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | k141_6498 | k141_6498_74 | 83228 | 83821 | + | 2.A.95.1.5 |
| NULL(UNKNOWN) | k141_6498 | k141_6498_75 | 84542 | 84988 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | k141_6498 | k141_6498_76 | 85072 | 86337 | - | 2.A.8.1.8 |
Gene ID: k141_6498_59
Type: TC
Location: 59131 - 60447 (+)
Type: TC
Location: 59131 - 60447 (+)
Gene ID: k141_6498_60
Type: CAZyme
Location: 60493 - 62580 (-)
Type: CAZyme
Location: 60493 - 62580 (-)
Gene ID: k141_6498_61
Type: CAZyme
Location: 62590 - 64983 (-)
Type: CAZyme
Location: 62590 - 64983 (-)
Gene ID: k141_6498_62
Type: TF
Location: 65611 - 68316 (+)
Type: TF
Location: 65611 - 68316 (+)
Gene ID: k141_6498_63
Type: TF
Location: 68358 - 69116 (-)
Type: TF
Location: 68358 - 69116 (-)
Gene ID: k141_6498_64
Type: TC
Location: 69132 - 69962 (-)
Type: TC
Location: 69132 - 69962 (-)
Gene ID: k141_6498_65
Type: STP
Location: 70038 - 70364 (-)
Type: STP
Location: 70038 - 70364 (-)
Gene ID: k141_6498_66
Type: pfam
Location: 70562 - 72070 (+)
Type: pfam
Location: 70562 - 72070 (+)
Gene ID: k141_6498_67
Type: CAZyme
Location: 72161 - 74608 (-)
Type: CAZyme
Location: 72161 - 74608 (-)
Gene ID: k141_6498_68
Type: CAZyme
Location: 74628 - 76061 (-)
Type: CAZyme
Location: 74628 - 76061 (-)
Gene ID: k141_6498_69
Type: pfam
Location: 76061 - 77356 (-)
Type: pfam
Location: 76061 - 77356 (-)
Gene ID: k141_6498_70
Type: CAZyme
Location: 77370 - 79346 (-)
Type: CAZyme
Location: 77370 - 79346 (-)
Gene ID: k141_6498_71
Type: CAZyme
Location: 79343 - 81529 (-)
Type: CAZyme
Location: 79343 - 81529 (-)
Gene ID: k141_6498_72
Type: pfam
Location: 81803 - 82909 (-)
Type: pfam
Location: 81803 - 82909 (-)
Gene ID: k141_6498_73
Type:
Location: 83070 - 83231 (+)
Type:
Location: 83070 - 83231 (+)
Gene ID: k141_6498_74
Type: TC
Location: 83228 - 83821 (+)
Type: TC
Location: 83228 - 83821 (+)
Gene ID: k141_6498_75
Type:
Location: 84542 - 84988 (+)
Type:
Location: 84542 - 84988 (+)
Gene ID: k141_6498_76
Type: TC
Location: 85072 - 86337 (-)
Type: TC
Location: 85072 - 86337 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Species
Citrobacter youngae
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| k141_6498_63 | vegetarian > vegan | 1.10256 | 0.01929 |
| k141_6498_65 | vegetarian > omnivore | 1.12140 | 0.03461 |