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Cluster: CGMR063819_CGC3

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme k141_20396 k141_20396_18 22836 23555 + GT51
TC k141_20396 k141_20396_19 23567 23839 - 8.A.8.1.5
pfam k141_20396 k141_20396_20 23836 24690 - RapZ-like_N | PapZ_C
TC k141_20396 k141_20396_21 24736 25227 - 4.A.2.1.7
pfam k141_20396 k141_20396_22 25311 25598 - Ribosomal_S30AE
pfam k141_20396 k141_20396_23 25621 27054 - Sigma54_AID | Sigma54_DBD | Sigma54_CBD
TC k141_20396 k141_20396_24 27101 27826 - 1.B.42.1.2
TC k141_20396 k141_20396_25 27833 28387 - 1.B.42.1.2
TC k141_20396 k141_20396_26 28356 28931 - 1.B.42.1.2
pfam k141_20396 k141_20396_27 28928 29494 - Hydrolase_3
STP k141_20396 k141_20396_28 29515 30501 - CBS | CBS | SIS
TC k141_20396 k141_20396_29 30515 31492 - 2.A.19.5.1
TC k141_20396 k141_20396_30 31707 32519 + 3.A.1.27.3
TC k141_20396 k141_20396_31 32527 33309 + 3.A.1.27.3
TC k141_20396 k141_20396_32 33314 33871 + 3.A.1.27.3
TC k141_20396 k141_20396_33 33890 34525 + 3.A.1.27.3
TC k141_20396 k141_20396_34 34525 34818 + 3.A.1.27.3
Gene ID: k141_20396_18
Type: CAZyme
Location: 22836 - 23555 (+)
Gene ID: k141_20396_19
Type: TC
Location: 23567 - 23839 (-)
Gene ID: k141_20396_20
Type: pfam
Location: 23836 - 24690 (-)
Gene ID: k141_20396_21
Type: TC
Location: 24736 - 25227 (-)
Gene ID: k141_20396_22
Type: pfam
Location: 25311 - 25598 (-)
Gene ID: k141_20396_23
Type: pfam
Location: 25621 - 27054 (-)
Gene ID: k141_20396_24
Type: TC
Location: 27101 - 27826 (-)
Gene ID: k141_20396_25
Type: TC
Location: 27833 - 28387 (-)
Gene ID: k141_20396_26
Type: TC
Location: 28356 - 28931 (-)
Gene ID: k141_20396_27
Type: pfam
Location: 28928 - 29494 (-)
Gene ID: k141_20396_28
Type: STP
Location: 29515 - 30501 (-)
Gene ID: k141_20396_29
Type: TC
Location: 30515 - 31492 (-)
Gene ID: k141_20396_30
Type: TC
Location: 31707 - 32519 (+)
Gene ID: k141_20396_31
Type: TC
Location: 32527 - 33309 (+)
Gene ID: k141_20396_32
Type: TC
Location: 33314 - 33871 (+)
Gene ID: k141_20396_33
Type: TC
Location: 33890 - 34525 (+)
Gene ID: k141_20396_34
Type: TC
Location: 34525 - 34818 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
k141_20396_27 omnivore > vegetarian 1.58967 0.03795

🧭 Explore Read Mapping of CGC

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