Cluster: CGMR063819_CGC12
🧬 Cluster Details
- Gene Count: 18
- CAZyme Count: 3
- Substrate:
- Genome ID: CGMR063819
- CGC Family ID: CGCFAM_00695
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | k141_16900 | k141_16900_91 | 88825 | 89571 | - | GT2 |
| NULL(UNKNOWN) | k141_16900 | k141_16900_92 | 89577 | 90794 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | k141_16900 | k141_16900_93 | 90769 | 91986 | - | GT4 |
| CAZyme | k141_16900 | k141_16900_94 | 92024 | 92866 | - | GT2 |
| TC | k141_16900 | k141_16900_95 | 92943 | 95105 | - | 8.A.3.3.2 |
| pfam | k141_16900 | k141_16900_96 | 95102 | 95551 | - | LMWPc |
| TC | k141_16900 | k141_16900_97 | 95557 | 96696 | - | 1.B.18.3.1 |
| TC | k141_16900 | k141_16900_98 | 97335 | 98936 | + | 2.A.109.2.3 |
| TC | k141_16900 | k141_16900_99 | 98981 | 100834 | - | 9.B.22.2.2 |
| pfam | k141_16900 | k141_16900_100 | 100860 | 101441 | - | DCD_N | DCD |
| pfam | k141_16900 | k141_16900_101 | 101533 | 102174 | - | PRK |
| TC | k141_16900 | k141_16900_102 | 102439 | 105819 | + | 9.B.34.1.1 |
| STP | k141_16900 | k141_16900_103 | 105787 | 106656 | - | AlkA_N | HhH-GPD |
| pfam | k141_16900 | k141_16900_104 | 106793 | 108145 | + | HSP70 | HSP70 |
| TC | k141_16900 | k141_16900_105 | 108583 | 109830 | + | 8.A.1.6.2 |
| TC | k141_16900 | k141_16900_106 | 109830 | 112952 | + | 2.A.6.2.12 |
| TC | k141_16900 | k141_16900_107 | 112953 | 116033 | + | 2.A.6.2.12 |
| TC | k141_16900 | k141_16900_108 | 116030 | 117442 | + | 2.A.1.3.26 |
Gene ID: k141_16900_91
Type: CAZyme
Location: 88825 - 89571 (-)
Type: CAZyme
Location: 88825 - 89571 (-)
Gene ID: k141_16900_92
Type:
Location: 89577 - 90794 (-)
Type:
Location: 89577 - 90794 (-)
Gene ID: k141_16900_93
Type: CAZyme
Location: 90769 - 91986 (-)
Type: CAZyme
Location: 90769 - 91986 (-)
Gene ID: k141_16900_94
Type: CAZyme
Location: 92024 - 92866 (-)
Type: CAZyme
Location: 92024 - 92866 (-)
Gene ID: k141_16900_95
Type: TC
Location: 92943 - 95105 (-)
Type: TC
Location: 92943 - 95105 (-)
Gene ID: k141_16900_96
Type: pfam
Location: 95102 - 95551 (-)
Type: pfam
Location: 95102 - 95551 (-)
Gene ID: k141_16900_97
Type: TC
Location: 95557 - 96696 (-)
Type: TC
Location: 95557 - 96696 (-)
Gene ID: k141_16900_98
Type: TC
Location: 97335 - 98936 (+)
Type: TC
Location: 97335 - 98936 (+)
Gene ID: k141_16900_99
Type: TC
Location: 98981 - 100834 (-)
Type: TC
Location: 98981 - 100834 (-)
Gene ID: k141_16900_100
Type: pfam
Location: 100860 - 101441 (-)
Type: pfam
Location: 100860 - 101441 (-)
Gene ID: k141_16900_101
Type: pfam
Location: 101533 - 102174 (-)
Type: pfam
Location: 101533 - 102174 (-)
Gene ID: k141_16900_102
Type: TC
Location: 102439 - 105819 (+)
Type: TC
Location: 102439 - 105819 (+)
Gene ID: k141_16900_103
Type: STP
Location: 105787 - 106656 (-)
Type: STP
Location: 105787 - 106656 (-)
Gene ID: k141_16900_104
Type: pfam
Location: 106793 - 108145 (+)
Type: pfam
Location: 106793 - 108145 (+)
Gene ID: k141_16900_105
Type: TC
Location: 108583 - 109830 (+)
Type: TC
Location: 108583 - 109830 (+)
Gene ID: k141_16900_106
Type: TC
Location: 109830 - 112952 (+)
Type: TC
Location: 109830 - 112952 (+)
Gene ID: k141_16900_107
Type: TC
Location: 112953 - 116033 (+)
Type: TC
Location: 112953 - 116033 (+)
Gene ID: k141_16900_108
Type: TC
Location: 116030 - 117442 (+)
Type: TC
Location: 116030 - 117442 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Species
Citrobacter youngae
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.