Cluster: CGMR063819_CGC1
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 1
- Substrate: chitin
- Genome ID: CGMR063819
- CGC Family ID: CGCFAM_00218
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | k141_5493 | k141_5493_10 | 8878 | 10269 | + | 2.A.23.1.8 |
| pfam | k141_5493 | k141_5493_11 | 10335 | 10574 | - | CedA |
| pfam | k141_5493 | k141_5493_12 | 10768 | 11526 | - | YdjC |
| CAZyme | k141_5493 | k141_5493_13 | 11539 | 12894 | - | GH4 |
| TF | k141_5493 | k141_5493_14 | 13018 | 13857 | - | HTH_AraC | HTH_AraC |
| TC | k141_5493 | k141_5493_15 | 13871 | 14218 | - | 4.A.3.2.1 |
| TC | k141_5493 | k141_5493_16 | 14273 | 15631 | - | 4.A.3.2.1 |
| TC | k141_5493 | k141_5493_17 | 15714 | 16034 | - | 4.A.3.2.7 |
Gene ID: k141_5493_10
Type: TC
Location: 8878 - 10269 (+)
Type: TC
Location: 8878 - 10269 (+)
Gene ID: k141_5493_11
Type: pfam
Location: 10335 - 10574 (-)
Type: pfam
Location: 10335 - 10574 (-)
Gene ID: k141_5493_12
Type: pfam
Location: 10768 - 11526 (-)
Type: pfam
Location: 10768 - 11526 (-)
Gene ID: k141_5493_13
Type: CAZyme
Location: 11539 - 12894 (-)
Type: CAZyme
Location: 11539 - 12894 (-)
Gene ID: k141_5493_14
Type: TF
Location: 13018 - 13857 (-)
Type: TF
Location: 13018 - 13857 (-)
Gene ID: k141_5493_15
Type: TC
Location: 13871 - 14218 (-)
Type: TC
Location: 13871 - 14218 (-)
Gene ID: k141_5493_16
Type: TC
Location: 14273 - 15631 (-)
Type: TC
Location: 14273 - 15631 (-)
Gene ID: k141_5493_17
Type: TC
Location: 15714 - 16034 (-)
Type: TC
Location: 15714 - 16034 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Species
Citrobacter youngae
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.