Cluster: CGMR063116_CGC47
🧬 Cluster Details
- Gene Count: 17
- CAZyme Count: 4
- Substrate:
- Genome ID: CGMR063116
- CGC Family ID: CGCFAM_00585
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | k141_5951 | k141_5951_15 | 16359 | 17777 | - | GH1 |
| TF | k141_5951 | k141_5951_16 | 18091 | 18804 | + | GntR |
| CAZyme | k141_5951 | k141_5951_17 | 18873 | 20834 | - | GH20 |
| sulfatase | k141_5951 | k141_5951_18 | 20948 | 23464 | - | S1_71 |
| CAZyme | k141_5951 | k141_5951_19 | 23626 | 26757 | - | GH38 |
| TC | k141_5951 | k141_5951_20 | 26843 | 27805 | - | 3.A.1.1.29 |
| TC | k141_5951 | k141_5951_21 | 27825 | 28784 | - | 3.A.1.1.10 |
| NULL(UNKNOWN) | k141_5951 | k141_5951_22 | 29266 | 29604 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TF | k141_5951 | k141_5951_23 | 29787 | 31307 | - | HTH_AraC | HTH_AraC |
| TC | k141_5951 | k141_5951_24 | 31311 | 33041 | - | 8.A.59.2.1 |
| NULL(UNKNOWN) | k141_5951 | k141_5951_25 | 33575 | 33871 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | k141_5951 | k141_5951_26 | 34133 | 35422 | + | GH125 |
| TC | k141_5951 | k141_5951_27 | 35473 | 37242 | - | 3.A.1.106.3 |
| TC | k141_5951 | k141_5951_28 | 37243 | 38985 | - | 3.A.1.106.3 |
| TF | k141_5951 | k141_5951_29 | 39198 | 40052 | + | HTH_AraC |
| STP | k141_5951 | k141_5951_30 | 40228 | 41679 | - | SBP_bac_1 |
| TC | k141_5951 | k141_5951_31 | 41855 | 42847 | - | 8.A.5.1.3 |
Gene ID: k141_5951_15
Type: CAZyme
Location: 16359 - 17777 (-)
Type: CAZyme
Location: 16359 - 17777 (-)
Gene ID: k141_5951_16
Type: TF
Location: 18091 - 18804 (+)
Type: TF
Location: 18091 - 18804 (+)
Gene ID: k141_5951_17
Type: CAZyme
Location: 18873 - 20834 (-)
Type: CAZyme
Location: 18873 - 20834 (-)
Gene ID: k141_5951_18
Type: sulfatase
Location: 20948 - 23464 (-)
Type: sulfatase
Location: 20948 - 23464 (-)
Gene ID: k141_5951_19
Type: CAZyme
Location: 23626 - 26757 (-)
Type: CAZyme
Location: 23626 - 26757 (-)
Gene ID: k141_5951_20
Type: TC
Location: 26843 - 27805 (-)
Type: TC
Location: 26843 - 27805 (-)
Gene ID: k141_5951_21
Type: TC
Location: 27825 - 28784 (-)
Type: TC
Location: 27825 - 28784 (-)
Gene ID: k141_5951_22
Type:
Location: 29266 - 29604 (+)
Type:
Location: 29266 - 29604 (+)
Gene ID: k141_5951_23
Type: TF
Location: 29787 - 31307 (-)
Type: TF
Location: 29787 - 31307 (-)
Gene ID: k141_5951_24
Type: TC
Location: 31311 - 33041 (-)
Type: TC
Location: 31311 - 33041 (-)
Gene ID: k141_5951_25
Type:
Location: 33575 - 33871 (-)
Type:
Location: 33575 - 33871 (-)
Gene ID: k141_5951_26
Type: CAZyme
Location: 34133 - 35422 (+)
Type: CAZyme
Location: 34133 - 35422 (+)
Gene ID: k141_5951_27
Type: TC
Location: 35473 - 37242 (-)
Type: TC
Location: 35473 - 37242 (-)
Gene ID: k141_5951_28
Type: TC
Location: 37243 - 38985 (-)
Type: TC
Location: 37243 - 38985 (-)
Gene ID: k141_5951_29
Type: TF
Location: 39198 - 40052 (+)
Type: TF
Location: 39198 - 40052 (+)
Gene ID: k141_5951_30
Type: STP
Location: 40228 - 41679 (-)
Type: STP
Location: 40228 - 41679 (-)
Gene ID: k141_5951_31
Type: TC
Location: 41855 - 42847 (-)
Type: TC
Location: 41855 - 42847 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Clostridiales
Family
Clostridiaceae
Genus
Clostridium
Species
Clostridium tertium
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.