Cluster: CGMR063116_CGC21
🧬 Cluster Details
- Gene Count: 32
- CAZyme Count: 5
- Substrate:
- Genome ID: CGMR063116
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | k141_35418 | k141_35418_4 | 2563 | 11133 | - | GH94 | GT84 |
| TF | k141_35418 | k141_35418_5 | 11609 | 12454 | - | HTH_6 |
| CAZyme | k141_35418 | k141_35418_6 | 12479 | 13558 | - | GH170 |
| CAZyme | k141_35418 | k141_35418_7 | 13795 | 14682 | - | CE1 |
| TC | k141_35418 | k141_35418_8 | 14929 | 16290 | - | 4.A.1.2.7 |
| STP | k141_35418 | k141_35418_9 | 16320 | 17225 | - | SIS |
| peptidase | k141_35418 | k141_35418_10 | 17449 | 18744 | - | M18.UPW |
| TC | k141_35418 | k141_35418_11 | 19284 | 20462 | + | 2.A.4.7.4 |
| pfam | k141_35418 | k141_35418_12 | 20793 | 21743 | - | BcrAD_BadFG |
| CAZyme | k141_35418 | k141_35418_13 | 21758 | 22852 | - | GH170 |
| TC | k141_35418 | k141_35418_14 | 22922 | 24196 | - | 4.A.3.2.8 |
| pfam | k141_35418 | k141_35418_15 | 24271 | 24579 | - | PTS_IIB |
| NULL(UNKNOWN) | k141_35418 | k141_35418_16 | 24721 | 25053 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | k141_35418 | k141_35418_17 | 25094 | 25411 | - | 4.A.3.2.2 |
| TC | k141_35418 | k141_35418_18 | 25748 | 27109 | - | 4.A.3.2.8 |
| pfam | k141_35418 | k141_35418_19 | 27175 | 27486 | - | PTS_IIB |
| NULL(UNKNOWN) | k141_35418 | k141_35418_20 | 27571 | 27903 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | k141_35418 | k141_35418_21 | 27941 | 28255 | - | 4.A.3.2.2 |
| pfam | k141_35418 | k141_35418_22 | 28530 | 31043 | - | Sel1 | Sel1 | Sel1 | Sel1 | Sel1 | Sel1 | Sel1 | Sel1 | Sel1 | Sel1 | Sel1 | Sel1 | Sel1 |
| pfam | k141_35418 | k141_35418_23 | 31356 | 32846 | - | FGGY_N | FGGY_C |
| TC | k141_35418 | k141_35418_24 | 32874 | 33629 | - | 1.A.8.2.6 |
| pfam | k141_35418 | k141_35418_25 | 33721 | 34281 | - | G3P_antiterm |
| pfam | k141_35418 | k141_35418_26 | 34546 | 34758 | - | DUF5808 |
| CAZyme | k141_35418 | k141_35418_27 | 34943 | 38905 | - | CBM32 |
| TC | k141_35418 | k141_35418_28 | 39017 | 39817 | - | 4.A.6.1.5 |
| TC | k141_35418 | k141_35418_29 | 39804 | 40598 | - | 4.A.6.1.5 |
| TC | k141_35418 | k141_35418_30 | 40611 | 41078 | - | 4.A.6.1.5 |
| TC | k141_35418 | k141_35418_31 | 41108 | 41581 | - | 4.A.6.1.5 |
| TF | k141_35418 | k141_35418_32 | 41818 | 42555 | + | GntR |
| TC | k141_35418 | k141_35418_33 | 42599 | 43321 | - | 3.A.1.3.25 |
| TC | k141_35418 | k141_35418_34 | 43308 | 43988 | - | 3.A.1.3.15 |
| TC | k141_35418 | k141_35418_35 | 44006 | 44818 | - | 3.A.1.3.27 |
Gene ID: k141_35418_4
Type: CAZyme
Location: 2563 - 11133 (-)
Type: CAZyme
Location: 2563 - 11133 (-)
Gene ID: k141_35418_5
Type: TF
Location: 11609 - 12454 (-)
Type: TF
Location: 11609 - 12454 (-)
Gene ID: k141_35418_6
Type: CAZyme
Location: 12479 - 13558 (-)
Type: CAZyme
Location: 12479 - 13558 (-)
Gene ID: k141_35418_7
Type: CAZyme
Location: 13795 - 14682 (-)
Type: CAZyme
Location: 13795 - 14682 (-)
Gene ID: k141_35418_8
Type: TC
Location: 14929 - 16290 (-)
Type: TC
Location: 14929 - 16290 (-)
Gene ID: k141_35418_9
Type: STP
Location: 16320 - 17225 (-)
Type: STP
Location: 16320 - 17225 (-)
Gene ID: k141_35418_10
Type: peptidase
Location: 17449 - 18744 (-)
Type: peptidase
Location: 17449 - 18744 (-)
Gene ID: k141_35418_11
Type: TC
Location: 19284 - 20462 (+)
Type: TC
Location: 19284 - 20462 (+)
Gene ID: k141_35418_12
Type: pfam
Location: 20793 - 21743 (-)
Type: pfam
Location: 20793 - 21743 (-)
Gene ID: k141_35418_13
Type: CAZyme
Location: 21758 - 22852 (-)
Type: CAZyme
Location: 21758 - 22852 (-)
Gene ID: k141_35418_14
Type: TC
Location: 22922 - 24196 (-)
Type: TC
Location: 22922 - 24196 (-)
Gene ID: k141_35418_15
Type: pfam
Location: 24271 - 24579 (-)
Type: pfam
Location: 24271 - 24579 (-)
Gene ID: k141_35418_16
Type:
Location: 24721 - 25053 (-)
Type:
Location: 24721 - 25053 (-)
Gene ID: k141_35418_17
Type: TC
Location: 25094 - 25411 (-)
Type: TC
Location: 25094 - 25411 (-)
Gene ID: k141_35418_18
Type: TC
Location: 25748 - 27109 (-)
Type: TC
Location: 25748 - 27109 (-)
Gene ID: k141_35418_19
Type: pfam
Location: 27175 - 27486 (-)
Type: pfam
Location: 27175 - 27486 (-)
Gene ID: k141_35418_20
Type:
Location: 27571 - 27903 (-)
Type:
Location: 27571 - 27903 (-)
Gene ID: k141_35418_21
Type: TC
Location: 27941 - 28255 (-)
Type: TC
Location: 27941 - 28255 (-)
Gene ID: k141_35418_22
Type: pfam
Location: 28530 - 31043 (-)
Type: pfam
Location: 28530 - 31043 (-)
Gene ID: k141_35418_23
Type: pfam
Location: 31356 - 32846 (-)
Type: pfam
Location: 31356 - 32846 (-)
Gene ID: k141_35418_24
Type: TC
Location: 32874 - 33629 (-)
Type: TC
Location: 32874 - 33629 (-)
Gene ID: k141_35418_25
Type: pfam
Location: 33721 - 34281 (-)
Type: pfam
Location: 33721 - 34281 (-)
Gene ID: k141_35418_26
Type: pfam
Location: 34546 - 34758 (-)
Type: pfam
Location: 34546 - 34758 (-)
Gene ID: k141_35418_27
Type: CAZyme
Location: 34943 - 38905 (-)
Type: CAZyme
Location: 34943 - 38905 (-)
Gene ID: k141_35418_28
Type: TC
Location: 39017 - 39817 (-)
Type: TC
Location: 39017 - 39817 (-)
Gene ID: k141_35418_29
Type: TC
Location: 39804 - 40598 (-)
Type: TC
Location: 39804 - 40598 (-)
Gene ID: k141_35418_30
Type: TC
Location: 40611 - 41078 (-)
Type: TC
Location: 40611 - 41078 (-)
Gene ID: k141_35418_31
Type: TC
Location: 41108 - 41581 (-)
Type: TC
Location: 41108 - 41581 (-)
Gene ID: k141_35418_32
Type: TF
Location: 41818 - 42555 (+)
Type: TF
Location: 41818 - 42555 (+)
Gene ID: k141_35418_33
Type: TC
Location: 42599 - 43321 (-)
Type: TC
Location: 42599 - 43321 (-)
Gene ID: k141_35418_34
Type: TC
Location: 43308 - 43988 (-)
Type: TC
Location: 43308 - 43988 (-)
Gene ID: k141_35418_35
Type: TC
Location: 44006 - 44818 (-)
Type: TC
Location: 44006 - 44818 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Clostridiales
Family
Clostridiaceae
Genus
Clostridium
Species
Clostridium tertium
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.