Cluster: CGMR061372_CGC40
🧬 Cluster Details
- Gene Count: 27
- CAZyme Count: 3
- Substrate:
- Genome ID: CGMR061372
- CGC Family ID: CGCFAM_03875
- Continent: Asia
- Source Study: Huang et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | k141_293714 | k141_293714_47 | 40156 | 40833 | - | 5.A.3.1.1 |
| pfam | k141_293714 | k141_293714_48 | 40836 | 41558 | - | Nitrate_red_del |
| TC | k141_293714 | k141_293714_49 | 41555 | 43099 | - | 5.A.3.1.1 |
| TC | k141_293714 | k141_293714_50 | 43096 | 46857 | - | 5.A.3.1.1 |
| NULL(UNKNOWN) | k141_293714 | k141_293714_51 | 47150 | 49018 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | k141_293714 | k141_293714_52 | 49021 | 49764 | - | GT2 |
| CAZyme | k141_293714 | k141_293714_53 | 49772 | 50827 | - | GT4 |
| CAZyme | k141_293714 | k141_293714_54 | 50829 | 51734 | - | GT2 |
| NULL(UNKNOWN) | k141_293714 | k141_293714_55 | 51738 | 52892 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | k141_293714 | k141_293714_56 | 52899 | 53747 | - | ATPgrasp_TupA |
| TC | k141_293714 | k141_293714_57 | 53728 | 55026 | - | 2.A.66.5.2 |
| TC | k141_293714 | k141_293714_58 | 55031 | 57214 | - | 8.A.3.3.2 |
| TC | k141_293714 | k141_293714_59 | 57242 | 58351 | - | 1.B.18.3.1 |
| TC | k141_293714 | k141_293714_60 | 58421 | 59470 | - | 9.B.146.1.7 |
| pfam | k141_293714 | k141_293714_61 | 59645 | 60607 | - | 3Beta_HSD | Epimerase | Polysacc_synt_2 | RmlD_sub_bind | NAD_binding_4 | NAD_binding_10 | GDP_Man_Dehyd |
| NULL(UNKNOWN) | k141_293714 | k141_293714_62 | 60788 | 61153 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | k141_293714 | k141_293714_63 | 62460 | 63854 | - | 2.A.1.8.1 |
| STP | k141_293714 | k141_293714_64 | 64205 | 65989 | + | HATPase_c |
| TF | k141_293714 | k141_293714_65 | 66000 | 66650 | + | GerE |
| TC | k141_293714 | k141_293714_66 | 66647 | 68158 | - | 1.B.54.1.9 |
| TC | k141_293714 | k141_293714_67 | 68589 | 69257 | + | 3.A.15.2.1 |
| NULL(UNKNOWN) | k141_293714 | k141_293714_68 | 69254 | 70864 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | k141_293714 | k141_293714_69 | 71096 | 72670 | - | 3.A.1.5.39 |
| TC | k141_293714 | k141_293714_70 | 72803 | 73474 | - | 3.A.1.5.39 |
| TC | k141_293714 | k141_293714_71 | 73471 | 74313 | - | 3.A.1.5.2 |
| TC | k141_293714 | k141_293714_72 | 74303 | 75172 | - | 3.A.1.5.38 |
| TC | k141_293714 | k141_293714_73 | 75169 | 76224 | - | 3.A.1.5.38 |
Gene ID: k141_293714_47
Type: TC
Location: 40156 - 40833 (-)
Type: TC
Location: 40156 - 40833 (-)
Gene ID: k141_293714_48
Type: pfam
Location: 40836 - 41558 (-)
Type: pfam
Location: 40836 - 41558 (-)
Gene ID: k141_293714_49
Type: TC
Location: 41555 - 43099 (-)
Type: TC
Location: 41555 - 43099 (-)
Gene ID: k141_293714_50
Type: TC
Location: 43096 - 46857 (-)
Type: TC
Location: 43096 - 46857 (-)
Gene ID: k141_293714_51
Type:
Location: 47150 - 49018 (-)
Type:
Location: 47150 - 49018 (-)
Gene ID: k141_293714_52
Type: CAZyme
Location: 49021 - 49764 (-)
Type: CAZyme
Location: 49021 - 49764 (-)
Gene ID: k141_293714_53
Type: CAZyme
Location: 49772 - 50827 (-)
Type: CAZyme
Location: 49772 - 50827 (-)
Gene ID: k141_293714_54
Type: CAZyme
Location: 50829 - 51734 (-)
Type: CAZyme
Location: 50829 - 51734 (-)
Gene ID: k141_293714_55
Type:
Location: 51738 - 52892 (-)
Type:
Location: 51738 - 52892 (-)
Gene ID: k141_293714_56
Type: pfam
Location: 52899 - 53747 (-)
Type: pfam
Location: 52899 - 53747 (-)
Gene ID: k141_293714_57
Type: TC
Location: 53728 - 55026 (-)
Type: TC
Location: 53728 - 55026 (-)
Gene ID: k141_293714_58
Type: TC
Location: 55031 - 57214 (-)
Type: TC
Location: 55031 - 57214 (-)
Gene ID: k141_293714_59
Type: TC
Location: 57242 - 58351 (-)
Type: TC
Location: 57242 - 58351 (-)
Gene ID: k141_293714_60
Type: TC
Location: 58421 - 59470 (-)
Type: TC
Location: 58421 - 59470 (-)
Gene ID: k141_293714_61
Type: pfam
Location: 59645 - 60607 (-)
Type: pfam
Location: 59645 - 60607 (-)
Gene ID: k141_293714_62
Type:
Location: 60788 - 61153 (-)
Type:
Location: 60788 - 61153 (-)
Gene ID: k141_293714_63
Type: TC
Location: 62460 - 63854 (-)
Type: TC
Location: 62460 - 63854 (-)
Gene ID: k141_293714_64
Type: STP
Location: 64205 - 65989 (+)
Type: STP
Location: 64205 - 65989 (+)
Gene ID: k141_293714_65
Type: TF
Location: 66000 - 66650 (+)
Type: TF
Location: 66000 - 66650 (+)
Gene ID: k141_293714_66
Type: TC
Location: 66647 - 68158 (-)
Type: TC
Location: 66647 - 68158 (-)
Gene ID: k141_293714_67
Type: TC
Location: 68589 - 69257 (+)
Type: TC
Location: 68589 - 69257 (+)
Gene ID: k141_293714_68
Type:
Location: 69254 - 70864 (-)
Type:
Location: 69254 - 70864 (-)
Gene ID: k141_293714_69
Type: TC
Location: 71096 - 72670 (-)
Type: TC
Location: 71096 - 72670 (-)
Gene ID: k141_293714_70
Type: TC
Location: 72803 - 73474 (-)
Type: TC
Location: 72803 - 73474 (-)
Gene ID: k141_293714_71
Type: TC
Location: 73471 - 74313 (-)
Type: TC
Location: 73471 - 74313 (-)
Gene ID: k141_293714_72
Type: TC
Location: 74303 - 75172 (-)
Type: TC
Location: 74303 - 75172 (-)
Gene ID: k141_293714_73
Type: TC
Location: 75169 - 76224 (-)
Type: TC
Location: 75169 - 76224 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Serratia
Species
Serratia bockelmannii
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.